| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,915,937 – 10,916,034 |
| Length | 97 |
| Max. P | 0.999395 |
| Location | 10,915,937 – 10,916,034 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.55 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -14.07 |
| Energy contribution | -14.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.92 |
| SVM decision value | 3.57 |
| SVM RNA-class probability | 0.999395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10915937 97 + 27905053 ACAUCCACAUCCACAUCCAAAGCCAUAUCCACAUUCACAUUCACAGAGAAUCGGAGUCAAAGCAAACCAGCAAGAUUGGCUCUGACCUUACACACAC .................((.(((((.(((...((((..((((.....))))..))))....((......))..)))))))).))............. ( -13.70) >DroSec_CAF1 186331 73 + 1 ACAUCCACAUCCACAU------------------------CCACAGAGAAUCGGAGUCAAAGCAAACCAGCAAGAUUGGCUCUGACCUUACACACAC ................------------------------.....(((..((((((((((.((......))....)))))))))).)))........ ( -13.70) >DroEre_CAF1 185939 94 + 1 ACAUCGACAUG--CAUCCACAGC-ACACAGAUAUCCACACUCACAGAGAAUCGGAGUCAAAGCAAACCAGCAAGGUUGGCUCUGACCUUACACACAC ..(((....((--(.......))-)....))).(((...(((...)))....)))((((.(((.((((.....)))).))).))))........... ( -18.30) >consensus ACAUCCACAUCCACAUCCA_AGC_A_A___A_AU_CACA_UCACAGAGAAUCGGAGUCAAAGCAAACCAGCAAGAUUGGCUCUGACCUUACACACAC .............................................(((..((((((((((.((......))....)))))))))).)))........ (-14.07 = -14.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:42 2006