| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,484,768 – 1,484,877 |
| Length | 109 |
| Max. P | 0.646482 |
| Location | 1,484,768 – 1,484,877 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -14.24 |
| Energy contribution | -15.76 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1484768 109 - 27905053 CACU-CCGUCACCAUCUCUAGAGGUGAUGAUCUCUCAGGCUCAGAUUCUCUGGCCAAAAUCUCUAGUUAAUGACAUCGGUUGCACACCCGACCCCUAUUGUUAUCGAUAC ....-.(((((((.((....)))))))))........(((.(((.....))))))..........((..((((((..(((((......))))).....))))))..)).. ( -29.70) >DroSec_CAF1 3831 108 - 1 CAC--CCGUCGCCAUCUCCAGAGGUGAUGAUCUCUCAGGCUCAGAUUCUCUGGCCAAAAUCUCUAGUUAAUAACAUCGGUUGCACACCCGACCGCUAUUGUUGUCGAUAC ...--.(((((((.((....)))))))))........(((.(((.....))))))..........((..((((((.((((((......))))))....))))))..)).. ( -32.00) >DroSim_CAF1 3826 108 - 1 CAC--CCGUCGCCAUCUCCAGAGGUGAUGAUCUCUCAGGCUAAGAUUCUCUGGCCAAAAUCUCUAGUUAAUAACAUCGGUUGCACACCCGACCGCUAUUGUUAUCGAUAC ...--.(((((((.((....)))))))))........(((((........)))))..........((..((((((.((((((......))))))....))))))..)).. ( -29.80) >DroEre_CAF1 4155 94 - 1 CACCCCCCACGCCAUCUGGUGAGGAG---AUCUCUCGGGCCAAGAUUCUCUGUCCAAAA---CC------GUAUACUGGUU----ACCCGAUCGCUUUUGCUAUCGAUAC .....(((.((((....))))..(((---....))))))..................((---((------(.....)))))----...((((.((....)).)))).... ( -21.40) >DroYak_CAF1 3697 100 - 1 CACC-CCCACGCCAUCUGUUGAGGCG---AUCUCUCAGGCCAAGAUUCUCUGUCCAAAAUCUCC------UUAUACCGGUUGCACACCCAAACGCAUUUGCUAUCAAUAC ....-.....((.(((.(((((((.(---((....((((.........))))......))).))------))).)).))).))..........((....))......... ( -14.40) >consensus CAC__CCGUCGCCAUCUCCAGAGGUGAUGAUCUCUCAGGCUAAGAUUCUCUGGCCAAAAUCUCUAGUUAAUAACAUCGGUUGCACACCCGACCGCUAUUGUUAUCGAUAC ......(((((((.((....)))))))))........((((.((.....)))))).....................((((((......))))))................ (-14.24 = -15.76 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:16 2006