Locus 3997

Sequence ID 3R_DroMel_CAF1
Location 10,880,400 – 10,880,495
Length 95
Max. P 0.741190
window6409

overview

Window 9

Location 10,880,400 – 10,880,495
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.82
Mean single sequence MFE -18.90
Consensus MFE -13.89
Energy contribution -12.53
Covariance contribution -1.36
Combinations/Pair 1.30
Mean z-score -1.75
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.741190
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10880400 95 + 27905053
ACUCGGCAUUCAUUAUGCCUCCCUUACGGCUGGUCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC---CU------AGCCCU----
....(((((.....)))))........((((((..........(((((((.((......)).)))))))....((....))......---))------))))..---- ( -18.80)
>DroPse_CAF1 187448 104 + 1
AU-UGGCAUUCAUUAUGCCUCCCAGUUGGCAGGCAUACACGUCGUAUGAUUAAUCUCAUUUCAUUAUGUUAUCGCUUAUGUUACAUC---UUCUAGGCAGCUCUCUCG
..-.(((......(((((((.((....)).))))))).((((...((((...........)))).))))....(((((.(.......---.).))))).)))...... ( -18.90)
>DroEre_CAF1 148800 95 + 1
ACUCGGCAUUCAUUAUGCCUCCCUUACGGCUGGCCCACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC---CU------AGCCCU----
....(((((.....)))))........((((((..........(((((((.((......)).)))))))....((....))......---))------))))..---- ( -18.60)
>DroYak_CAF1 157784 98 + 1
ACUCGGCAUUCAUUAGGCCUCCCUUACGGCUGGCCCACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUCCUCCU------AGCCCU----
....((((((.....((((..((....))..))))........(((((((.((......)).))))))).......))))))..........------......---- ( -19.80)
>DroAna_CAF1 149452 97 + 1
ACUCGGCAUUCAUUAUGCCUCCCACCGGGCUGGCCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUUAUGCUACAUC---UU----GCAUCCCC----
....(((((.....))))).......(((...((....((((.((((((..........................)))))).)))).---..----))..))).---- ( -17.07)
>DroPer_CAF1 188776 104 + 1
AU-UGGCAUUCAUUAUGCCUCCCAGUGGGCAGGCAUACACGUCGUAUGAUUAAUCUCAUUUCAUUAUGUUAUCGUUUAUGUUACAUC---UUCUAGGCAGCUCUCUCG
..-.(((((.....)))))....((.((((.((((((.(((.(((((((...........))).))))....))).))))))...((---.....))..)))).)).. ( -20.20)
>consensus
ACUCGGCAUUCAUUAUGCCUCCCAUACGGCUGGCCUACAUGUCGUAUGAUUAAUCCCAUUUCAUUAUAUUAUCGCUAAUGCCACAUC___CU______AGCCCU____
....(((((.......(((........)))((((....((((...((((...........)))).))))....))))))))).......................... (-13.89 = -12.53 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:31 2006