Locus 3992

Sequence ID 3R_DroMel_CAF1
Location 10,843,437 – 10,843,536
Length 99
Max. P 0.576773
window6403

overview

Window 3

Location 10,843,437 – 10,843,536
Length 99
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 89.61
Mean single sequence MFE -28.03
Consensus MFE -23.04
Energy contribution -22.82
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.87
Structure conservation index 0.82
SVM decision value 0.09
SVM RNA-class probability 0.576773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10843437 99 + 27905053
UGUGUGUGCAAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC
(((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.40)
>DroSec_CAF1 112814 99 + 1
UGUGUGUGCGAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC
(((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.10)
>DroSim_CAF1 119108 99 + 1
UGUGUGUGCGAUGUGGAAUGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC
(((((.((((((((.....(((...(((((..((((((((......))))))))....))))).)))....))).))))).........)--))))..... ( -28.10)
>DroEre_CAF1 115357 90 + 1
UGU---------GUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACACGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAG--CACAAACAA
(((---------((((.(((((...(((((..((((((((......))))))))....))))).)))))..((....)).......))).--))))..... ( -28.80)
>DroYak_CAF1 123471 90 + 1
UGU---------GUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACACGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA--CACAAACAC
(((---------((((.(((((...(((((..((((((((......))))))))....))))).)))))..((....)).......)).)--))))..... ( -28.80)
>DroAna_CAF1 116395 92 + 1
U---------AUGUGAAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGGUAGCAAACAAGCCAACGCACAAGCAC
.---------..(((..(((((...(((((..((((((((......))))))))....))))).)))))..(((...((......))...))).....))) ( -26.00)
>consensus
UGU_______AUGUGGAAAGGGAAAAGGGUCACGUGUCAGAUGUCAUUGACAUGGUUUGCCUUGCCUUUAAGCGUUUGCAAACAAACCAA__CACAAACAC
............(((.....((..........((((((((......))))))))((((((..(((......)))...))))))...))....)))...... (-23.04 = -22.82 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:25 2006