| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,842,457 – 10,842,549 |
| Length | 92 |
| Max. P | 0.539325 |
| Location | 10,842,457 – 10,842,549 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -20.50 |
| Energy contribution | -21.93 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10842457 92 + 27905053 ------UUCGGGGGCAAGACCCGAAUGGCGGUGC--UAGCCGCUUGCUGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA---CGCUGCGUAUACG ------(((((((......)))..((((((((((--((((.....))))).))).)))))).............)))).(((((...---.)))))....... ( -37.10) >DroPse_CAF1 146165 90 + 1 GCUUUAUUC------CCCAUCCCAUUCUCCUCACUAAAAUC-------GGGUGCACGCCAUAUACAAAUUAUAAUGAAAACGGCGGACAACGCUGCGUAUACG .........------..(((((.(((...........))).-------))))).((((((((((.....))).))).....((((.....))))))))..... ( -12.50) >DroSec_CAF1 111858 92 + 1 ------UUCGGGGGCAAGCCCCGAAUGGCGGCAC--UAGCCGCUUGCCGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA---CGCUGCGUAUACG ------(((((((.....)))))))..(((((..--..(((((((..((((.....))).((.......))....).)))))))...---.)))))....... ( -34.90) >DroSim_CAF1 118147 92 + 1 ------UUCGGGGGCAAGCCCCGAAUGGCGGCAC--UAGCCGUUUGCCGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA---CGCUGCGUAUACG ------(((((((.....))))))).((((((..--..)))((((((((((.....)))...............(....).))))))---))))......... ( -35.40) >DroEre_CAF1 114395 92 + 1 ------UUCGGGGGCAAGCCCCGAGUGGAGGCAG--UAGCCGGUUGCUGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA---CGCUGCGUAUACG ------.((((((.....))))))(((.(.((((--(.((((((...((((.....))))...)).........(....)))))...---.))))).).))). ( -34.40) >DroYak_CAF1 122492 92 + 1 ------UUCGGGGGCAAGCGCCGAGUGGAGGCAG--UAGCCGGUUGCUGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA---CGCUGCGUAUACG ------.((((.(.....).))))(((.(.((((--(.((((((...((((.....))))...)).........(....)))))...---.))))).).))). ( -29.50) >consensus ______UUCGGGGGCAAGCCCCGAAUGGCGGCAC__UAGCCGCUUGCUGGCCACACGCCAUAUACAAAUUAAAACGAAAGCGGCGGA___CGCUGCGUAUACG ......(((((((.....)))))))....(((......((((.....)))).....))).(((((...((......)).((((((.....))))))))))).. (-20.50 = -21.93 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006