| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,841,809 – 10,841,907 |
| Length | 98 |
| Max. P | 0.996469 |
| Location | 10,841,809 – 10,841,907 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.08 |
| Mean single sequence MFE | -17.32 |
| Consensus MFE | -14.97 |
| Energy contribution | -14.77 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.86 |
| SVM decision value | 2.70 |
| SVM RNA-class probability | 0.996469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10841809 98 + 27905053 UACCUCCACUUUCUGAUACUCCCACUUCUCGUGGGACGGGCUACUUUCCAAU-UUAUUU---UCCUUUUAUUAUGUCCAAUAGUGAUACCAAUUCGACUUUU ......((((....((((.((((((.....)))))).(((......)))...-......---...........))))....))))................. ( -16.80) >DroSec_CAF1 111210 98 + 1 UACCUCCACUUUCUGAUACUCCCACUUCUCGUGGGGCGGGCUACUUUCCAAU-UUAUUU---UCCUUUUAUUAUGUCCGAUAGUGAUACCAAUUCGACUUUU ......((((.((.((((.((((((.....)))))).(((......)))...-......---...........)))).)).))))................. ( -18.70) >DroSim_CAF1 117501 98 + 1 UACCUCCACUUUCUGAUACUCCCACUUCUCGUGGGGCGGGCUACUUUCCAAU-UUAUUU---UCCUUUUAUUAUGUCCGAUAGUGAUACCAAUUCGACUUUU ......((((.((.((((.((((((.....)))))).(((......)))...-......---...........)))).)).))))................. ( -18.70) >DroEre_CAF1 113771 100 + 1 UACCUCCACUUUCUGAUACUCCCACUUCUCGUGGGGCG-GCUACUUUUCAAUUUUAUUUCCUUCCUUUUAUUAUGCCCAAUAGUGAUACCAGUUCAGCUUU- ............((((.((((((((.....)))))...-............................(((((((.....)))))))....)))))))....- ( -14.70) >DroYak_CAF1 121819 98 + 1 UACCUCCACUUUCAGACACUCCCACUUCUCGUGGGGCGGGCUACUUUUCAAUAUUAUUU---UCCUUUUAUUAUGCCCAACAGUGAUACCAAUUCAGCUUU- ................(((((((((.....)))))..((((..................---............))))...))))................- ( -17.71) >consensus UACCUCCACUUUCUGAUACUCCCACUUCUCGUGGGGCGGGCUACUUUCCAAU_UUAUUU___UCCUUUUAUUAUGUCCAAUAGUGAUACCAAUUCGACUUUU ......((((.........((((((.....)))))).((((.................................))))...))))................. (-14.97 = -14.77 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:23 2006