Locus 399

Sequence ID 3R_DroMel_CAF1
Location 1,484,571 – 1,484,672
Length 101
Max. P 0.500000
window655

overview

Window 5

Location 1,484,571 – 1,484,672
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 89.37
Mean single sequence MFE -18.40
Consensus MFE -16.49
Energy contribution -16.93
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.90
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1484571 101 + 27905053
AACGCUGUAAGUAAAUAAAUAAUUAGGAUCGCGAUCCAAUGAUAUUUGCGGUGAAAUGACCGACAGUAUUAAUAUAACGUCUAAUUGUUUGCAUUAAAUAU
..........((((((((.......((((....))))..(((((((..((((......))))..))))))).............))))))))......... ( -19.60)
>DroSec_CAF1 3636 99 + 1
AACGCUGAAAGUAAAUAAACAAUUCGGAUA--GAUCCAAUGAUAUUUGCGGUCAAAUAACCAUCAGUAUUAAUAUAACGUUUAAUUGUUUGCAUUAAAUAU
...(((((..(((((((....(((.(((..--..))))))..)))))))(((......))).))))).(((((..((((......))))...))))).... ( -16.90)
>DroSim_CAF1 3636 94 + 1
AACGCUGUAAGUAAAUAAACAAUUCGGAUC--GAUCCAAUGAUAUUUGCGGUCAAAUAACCGUCAGUA-----AUAACGUUUAAUUGUUUGCAUUAAAUAU
.....(((((((((.(((((.....(((..--..))).....((((.(((((......))))).))))-----.....))))).)))))))))........ ( -18.70)
>consensus
AACGCUGUAAGUAAAUAAACAAUUCGGAUC__GAUCCAAUGAUAUUUGCGGUCAAAUAACCGUCAGUAUUAAUAUAACGUUUAAUUGUUUGCAUUAAAUAU
...(((((..(((((((....(((.((((....)))))))..)))))))(((......))).)))))...........(((((((.(....)))))))).. (-16.49 = -16.93 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:15 2006