Locus 3987

Sequence ID 3R_DroMel_CAF1
Location 10,818,970 – 10,819,062
Length 92
Max. P 0.583289
window6395

overview

Window 5

Location 10,818,970 – 10,819,062
Length 92
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 85.66
Mean single sequence MFE -34.12
Consensus MFE -23.39
Energy contribution -24.89
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -3.03
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.583289
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10818970 92 - 27905053
GUGUGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC
(((((((....)))))))((((.....((((.......)))).)))).---....(((((....)))))...(((((((.....----------.)))))))... ( -33.80)
>DroSec_CAF1 88550 92 - 1
GUGAGCCGAGUGGCACACGGCAAGCAAUGUAAAAUGAACGCAAUGCCA---CUACGUGACGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC
((((((((.(((((....((((.((..............))..)))).---(((.(((.((.....))))).))))))))....----------.)))))))).. ( -34.24)
>DroSim_CAF1 94602 92 - 1
GUGUGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG----------AUGGCUCACAC
(((((((....)))))))((((.....((((.......)))).)))).---....(((((....)))))...(((((((.....----------.)))))))... ( -33.80)
>DroEre_CAF1 90968 102 - 1
GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAGCUAUGUAUAGGUGGCUCACGC
((((((((.(((((.((.((((.....((((.......)))).)))).---....(((((....)))))...)).)))))....(((....))).)))))))).. ( -36.20)
>DroYak_CAF1 93154 102 - 1
GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA---CUACGUGAUGAUAAUCGCACAUGGGCCACAUAGCUAUGUGUUGGUGGCUCACUC
(((((((.(((((((....((...((........))...))..)))))---))..(((((....)))))......((((((((....)))).))))))))))).. ( -38.00)
>DroAna_CAF1 92298 84 - 1
GUGAGCCGAGCGGCACACGGCAGGGCAUGUGAAAUGAACGCAAUGCCAAUGCUACGUGAUGAUAAUCGCACAUGGGUCACAUAA---------------------
((((.(((((((((.....))..((((((((.......))).)))))..))))..(((((....)))))...))).))))....--------------------- ( -28.70)
>consensus
GUGAGCCGAGUGGCACACGGCAAGCAAUGUGAAAUGAACGCAAUGCCA___CUACGUGAUGAUAAUCGCACAUGGGCCACAUAG__________AUGGCUCACAC
(((.(((....))).)))((((.....((((.......)))).))))........(((((....)))))...(((((((................)))))))... (-23.39 = -24.89 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:17 2006