| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,813,789 – 10,813,882 |
| Length | 93 |
| Max. P | 0.853998 |
| Location | 10,813,789 – 10,813,882 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.18 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -26.25 |
| Energy contribution | -26.20 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10813789 93 + 27905053 CGAAUCAGA---AACCGGUGGAAAUGGAAACGGAGGGCCGAAAGGCAUUCCAUGUGGCCAAGCCGCACCGACCACAAAAUGCCUCC---AGGAUGUAUC .........---..((((.((...(((....((((.(((....))).)))).((((((...))))))....))).......)).))---.))....... ( -29.50) >DroPse_CAF1 107037 92 + 1 UGGG--AGGUAUAGCCGGCGGAAC---GAAUGGAGAGU-AAAAAGCAUUCCAUGUGGCCCGGCCGCACGGACCACAAAAUGCCUUCAACAGGAUGUGU- ..((--((((((...((......)---).((((((.((-.....)).))))))((((.(((......))).))))...))))))))............- ( -28.70) >DroSec_CAF1 83376 93 + 1 CGAAUCAGG---AACCGGUGGAAAUGGAAACGGAGGGCCGAAAGGCAUUUCAUGUGGCCAAGCCGCACCGACCACAAAAUGCCUCC---AGGAUGUAUC .........---..((.........(....)((((((((....)))......((((((...))))))..............)))))---.))....... ( -29.00) >DroSim_CAF1 87701 93 + 1 CGAAUCAGG---AACCGGUGGAAAUGGAAACGGAGGGCCGAAAGGCAUUCCAUGUGGCCAAGCCGCACCGACCACAAAAUGCCUCC---AGGAUGUAUC ......(((---.....((((...(((....((((.(((....))).)))).((((((...))))))))).))))......)))..---.......... ( -31.10) >DroEre_CAF1 85726 93 + 1 CGAAUCAGG---AACCGGUGGAAAUGGAAACGGAGGCCCGAAAGGCAUUCCAUGUGGCCAAGCCGCACAGACCACAAAAUGCCUCC---AGGAAGUAUA .........---..((.........(....)((((((((....))...((..((((((...))))))..)).........))))))---.))....... ( -27.90) >DroYak_CAF1 87743 93 + 1 CGAAUCAGG---AAACGGUGGAAAUGGAAACGGAGGGCCUAAAGGCAUUCCGUGUGGCCAAGCCGCACCAACCACAAAAUGCCUCC---AGGAUGUAUC ...(((.(.---...).((((...(((..((((((.(((....))).))))))(((((...))))).))).))))...........---..)))..... ( -30.80) >consensus CGAAUCAGG___AACCGGUGGAAAUGGAAACGGAGGGCCGAAAGGCAUUCCAUGUGGCCAAGCCGCACCGACCACAAAAUGCCUCC___AGGAUGUAUC .................((((..........((((.(((....))).)))).((((((...))))))....))))...((((.(((....))).)))). (-26.25 = -26.20 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:11 2006