Locus 3981

Sequence ID 3R_DroMel_CAF1
Location 10,801,624 – 10,801,725
Length 101
Max. P 0.852667
window6383

overview

Window 3

Location 10,801,624 – 10,801,725
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 91.41
Mean single sequence MFE -15.33
Consensus MFE -13.72
Energy contribution -13.76
Covariance contribution 0.04
Combinations/Pair 1.11
Mean z-score -1.40
Structure conservation index 0.90
SVM decision value 0.79
SVM RNA-class probability 0.852667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10801624 101 + 27905053
UAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACUCGUAUAUCUAUAUUCAUGUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUG
.............((((((((.......((((.....))))..((((..((.(((....))).))..)))).....)))))))).--................ ( -16.00)
>DroSec_CAF1 71289 101 + 1
CAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAAACACGUAUAUCUAUAUUUAUAUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUU
.............((((((((....((((((((((.....................))))))))))..........)))))))).--................ ( -15.04)
>DroSim_CAF1 75543 101 + 1
CAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGUGCAAA--AUAUCUAUUUCAACUG
.............((((((((......(((((.....))))).((((..((.(((....))).))..)))).....)))))))).--................ ( -16.80)
>DroEre_CAF1 73489 100 + 1
UAUUUUCACAUGAUUGCACUUAAUUCUUGUAUGUAUAAUACGCGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGCGCAAAAAAUAUC---UUCAACUU
.............((((.(((.......((((((.......((((((..........))))))..)))))).....))).))))........---........ ( -14.20)
>DroYak_CAF1 75322 103 + 1
UAUUUCCACAUGAUUGCGCUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUGUGCCAGCAUACUUACAGAGUGCAAAAAAUAUCUACUUCAACCG
.............((((((((......(((((.....))))).((((((........)))))).............))))))))................... ( -14.60)
>consensus
UAUUUCCACAUGAUUGCACUUAAUUCUUGUAUAUAUAAUACACGUAUAUCUAUAUUCAUAUGCAGGCAUACUUACAGAGUGCAAA__AUAUCUAUUUCAACUG
.............((((((((.......((((.....))))..((((((........)))))).............))))))))................... (-13.72 = -13.76 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:06 2006