Locus 3977

Sequence ID 3R_DroMel_CAF1
Location 10,769,414 – 10,769,515
Length 101
Max. P 0.699110
window6375

overview

Window 5

Location 10,769,414 – 10,769,515
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 83.09
Mean single sequence MFE -20.82
Consensus MFE -11.99
Energy contribution -13.87
Covariance contribution 1.88
Combinations/Pair 1.24
Mean z-score -2.93
Structure conservation index 0.58
SVM decision value 0.35
SVM RNA-class probability 0.699110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10769414 101 + 27905053
UCUUUAAUGAAAAGCUUUUACUUUUACUCAAUGAAAAUCGAUGAAGGCAUCUUCAUUCUUGUCUUCU-UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUCU
............(((...(((....((..((.((((((((((((((....)))))))...(((....-....)))))))))).))..))..)))...))).. ( -20.20)
>DroSec_CAF1 40149 101 + 1
UUAUUAAUGAAAAGCUUUUACAUUUACUAAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGAGGAUUUUCCUUUUGUUUGUAUUUGCUUU
..........(((((...((((...((.(((.(((((((((.(((((((..........))))))).-)).....))))))).))).)).))))...))))) ( -22.50)
>DroSim_CAF1 40726 101 + 1
UCUUUAAUGAAAAGCUUUUACAUUUACUCAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUUU
..........(((((...((((...((..((.((((((((..(((((((..........))))))).-......)))))))).))..)).))))...))))) ( -22.40)
>DroEre_CAF1 41817 101 + 1
UCUUUAAAGAAAAGCUGUUACAUUUACAGAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU-UCUUGACGAUUUUCCCUUUGUUUGUAUUUCCUUU
..........((((....((((...(((((..((((((((..(((((((..........))))))).-......))))))))..))))).))))....)))) ( -21.50)
>DroYak_CAF1 43243 101 + 1
UCUUUAAUGAAAAGCUUUUACAUUUACAGAAUGAAAAUCGAUGAAGGCGUCUUCAUUCUUGUCUCCG-UCCUGACGAUUUUCCUUUUGUUUGUAUUUCCUUU
..........((((....((((...((((((.((((((((((((((....)))))))...(((....-....)))))))))).)))))).))))....)))) ( -24.40)
>DroAna_CAF1 43190 91 + 1
AUUUUA--GAAAAGCAUCUCUG-CUGCGGA-AAAAAAUCGAUGGUGA-AUCGUUUUUC---UCUACUAUCUU---GCUUUUUCUUUUGUUUGUAUUGGGUUU
......--((((((((......-..(..((-.(((((.((((.....-))))))))).---))..).....)---))))))).................... ( -13.92)
>consensus
UCUUUAAUGAAAAGCUUUUACAUUUACUGAAUGAAAAUCGAUGAAGGCAUCUUCUUUCUUGUCUUCU_UCUUGACGAUUUUCCUUUUGUUUGUAUUUGCUUU
..........(((((...((((...((.(((.((((((((..(((((((..........)))))))........)))))))).))).)).))))...))))) (-11.99 = -13.87 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006