Locus 3976

Sequence ID 3R_DroMel_CAF1
Location 10,763,445 – 10,763,539
Length 94
Max. P 0.500000
window6374

overview

Window 4

Location 10,763,445 – 10,763,539
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 82.34
Mean single sequence MFE -24.06
Consensus MFE -17.88
Energy contribution -18.92
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10763445 94 + 27905053
ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUCGAAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUA---------------
.(((((((((....)))))))))...............(((((((((((..(((((((((....))))))).))..)))..))))).)))....--------------- ( -25.60)
>DroSec_CAF1 34220 94 + 1
ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGAACACCUUCUGGUAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU---------------
.(((((((((....)))))))))..((((((...((((((((..........(((((((......))))))))))))))).)))))).......--------------- ( -22.80)
>DroSim_CAF1 34766 94 + 1
ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUGGUAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU---------------
.(((((((((....)))))))))...............(((((((((((..((((((((......)))))).))..)))..))))).)))....--------------- ( -23.50)
>DroEre_CAF1 35558 99 + 1
ACACAAACAAGAGGUUGUUUGUGGAAGUAAGGUAGGGAUUCGCUAAGAGAACACCUUCUG----------GAUGGAUUUUAUUUGCAGAACAUUAAAUUCCCGAAGGGA
.(((((((((....)))))))))...(((((...(((((((((((..((.....))..))----------).)))))))).)))))..............((....)). ( -24.50)
>DroYak_CAF1 36645 106 + 1
ACACAAAUAAGAGGUUGUUUGUGGAAGUAAGGUAGGGAUUCGCUAAGAGGACACCUUCUGCAAUGGCAGGGAUGGAUUUUAUUUGCAGAGCAUUAAAUUCUUCAAG---
.(((((((((....))))))))).....(((((..(..(((.....)))..))))))((((....)))).((.((((((....(((...)))..)))))).))...--- ( -23.90)
>consensus
ACACAAAUAAGAGCUUGUUUGUGGAAGUAAGGUAGGGAUUCGCAAAGAGGACACCUUCUGGAAUGGGAGGGUUGGAUUUUAUUUGCUGAACAUU_______________
.(((((((((....))))))))).(((((((((..(..(((.....)))..).((((((......))))))....)))))))))......................... (-17.88 = -18.92 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:58 2006