| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,761,089 – 10,761,183 |
| Length | 94 |
| Max. P | 0.505761 |
| Location | 10,761,089 – 10,761,183 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.90 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -19.67 |
| Energy contribution | -20.45 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10761089 94 - 27905053 CA-AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -26.00) >DroSec_CAF1 31836 95 - 1 CAGAAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -26.00) >DroSim_CAF1 32380 95 - 1 CAGAAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUUUGGGUUCCUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ ( -23.00) >DroEre_CAF1 33121 94 - 1 CA-AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCCUUGCCCGAUUCCCAGCCACAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))..(((...((.((((..((.(((((.((.......))..))))).))..)))).))..)))........ ( -21.10) >DroYak_CAF1 33406 93 - 1 CA-AAGUGAACCCGAACAGAGUCAACAAUCAUUUUGC-AAAGAUGUCUGGGUUCUUUGCCCGAUUCCCGGGCACAUUUGUCAUUUGAAUUAACCG ((-((..(((((((.(((.......(((.....))).-.....))).)))))))..((((((.....)))))).........))))......... ( -24.52) >DroAna_CAF1 33443 94 - 1 CU-AAGUGAACUCUAGUAGAGUCAACAAUCAGUUUCCCAACGAUGUCUGGGCCCUGCUACCGAUUCCCUGGCGCAUUUGUCAUUUGAAUUAACCG ..-..((..((((.....))))..))...(((...((((........))))..))).....(((((..(((((....)))))...)))))..... ( -16.90) >consensus CA_AAGUGAACUCGAACAGAGUCAACAAUCAUUUUGCCAAAGAUGUCUGGGUUCUUUGCCCGAUUCCCAGGCACAUUUGUCAUUUGAAUUAACCG .....((..((((.....))))..))..(((...((.((((..((((((((.((.......))..))))))))..)))).))..)))........ (-19.67 = -20.45 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:57 2006