| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,758,649 – 10,758,754 |
| Length | 105 |
| Max. P | 0.564550 |
| Location | 10,758,649 – 10,758,754 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.13 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -15.55 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10758649 105 - 27905053 UGGCCA-----------ACAAAUAGACGGCCUACAACUUUGUUUACACAAACACUUGGGCAGAAUGUUGGCCACAUUGCGUAUACGCCACCGACAACAGA-AACAGCCGCA---CAGCAG ((((((-----------(((........(((((....(((((....)))))....)))))....)))))))))....(((....))).............-....((....---..)).. ( -25.60) >DroVir_CAF1 44485 106 - 1 UGGCGAGCAAACGACAAACAAAUAGACGGCCCUCAACUUUGUUUACACAAACACGUUGGCA-AAUGGCGGCCACAUUGCGUAUACGCCACCGGCACCACAAAACAAC------------- (((((.((((..(.....)........((((.(((..(((((..((........))..)))-))))).))))...)))).....)))))..................------------- ( -22.50) >DroPse_CAF1 41454 116 - 1 UGGCGUACAAACGGCAAACAAAUAGACGGCCUACAACUUUGUUUACACAAACACUUUGGCAAAAUGUCGGCCACAUUGCGUAUACGCCACCGUUACCACC----GACCACACCACAACAG (((((....(((((.............((((.(((..((((((..............)))))).))).)))).....(((....)))..))))).....)----).)))........... ( -24.14) >DroGri_CAF1 39654 106 - 1 UGGCGAGCAAACGACAAACAAAUAGACGGCCAACAAUUUUGUUUACACAAACACAGUGGCA-AAUGGCGGCCACAUUACGUAUACGCCACCGGCACCACAAAACAAC------------- (((((.....(((..(((((((...............)))))))...........(((((.-.......)))))....)))...)))))..................------------- ( -20.06) >DroAna_CAF1 30967 118 - 1 UGGCAAACAAACAGCAAACAAAUAGACGGCCUACAACUUUGUUUACACAAACACUUUGGCAAAAUGUCGGCCACAUUGCGUAUACGCCACCGACAACCGU-AGCAACCGCA-CAUAGCAG .............((..........((((((......(((((....)))))......)))....((((((.......(((....)))..))))))..)))-.((....)).-....)).. ( -22.50) >DroPer_CAF1 40831 116 - 1 UGGCGUACAAACGGCAAACAAAUAGACGGCCUACAACUUUGUUUACACAAACACUUUGGCAAAAUGUCGGCCACAUUGCGUAUACGCCACCGUCACCACC----GACCACACCACAACAG (((((((...(((.(((.(.....)..((((.(((..((((((..............)))))).))).))))...)))))).)))))))..(((......----)))............. ( -25.44) >consensus UGGCGAACAAACGGCAAACAAAUAGACGGCCUACAACUUUGUUUACACAAACACUUUGGCAAAAUGUCGGCCACAUUGCGUAUACGCCACCGACACCACA_AACAACC_CA___CA_CAG (((((......................((((.(((..((((((..............)))))).))).))))((.....))...)))))............................... (-15.55 = -16.07 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:55 2006