Locus 3972

Sequence ID 3R_DroMel_CAF1
Location 10,750,240 – 10,750,451
Length 211
Max. P 0.782471
window6369 window6370

overview

Window 9

Location 10,750,240 – 10,750,350
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 97.76
Mean single sequence MFE -24.58
Consensus MFE -22.14
Energy contribution -22.00
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.56
SVM RNA-class probability 0.782471
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10750240 110 - 27905053
AUUAUCCGGGCGCAUUUAUCUCGCAUUGGCAAUUGGAUUUGUAAUGUGACUAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((.(((...((((..((((((((.(((......))))))))))).))))))).(......)....)))))).....(((((((....)))))))........... ( -24.70)
>DroPse_CAF1 29255 110 - 1
AUUAUCCGAGCGCAUUUAUCUCGCAUUGGCAAUUGGAUUUGUAAUGUGACCAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((...((..(((.(((.((.((((((((((......)))).)).)))).)).))).))).))...)))))).....(((((((....)))))))........... ( -25.10)
>DroEre_CAF1 21906 110 - 1
AUUAUCCGGGCGCAUUUAUCUCGCAUUGGCAAUUGGAUUUGUAAUGUGACUAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((.(((...((((..((((((((.(((......))))))))))).))))))).(......)....)))))).....(((((((....)))))))........... ( -24.70)
>DroYak_CAF1 22396 110 - 1
AUUAUCCGGGCGCAUUUAUCUCGCAUUGCCAAUUGGAUUUGUAAUGUGACUAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((.(((...((((..(((((((((.((......))))))))))).))))))).(......)....)))))).....(((((((....)))))))........... ( -24.70)
>DroAna_CAF1 20336 110 - 1
AUUAUCCAAACGCAUUUAUCUCACAUUGGCAAUUGGAUUUGUAAUGUGACUAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((....((.((((..((((((((.(((......))))))))))).))))))..(......)....)))))).....(((((((....)))))))........... ( -23.20)
>DroPer_CAF1 28470 110 - 1
AUUAUCCGAGCGCAUUUAUCUCGCAUUGGCAAUUGGAUUUGUAAUGUGACCAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((...((..(((.(((.((.((((((((((......)))).)).)))).)).))).))).))...)))))).....(((((((....)))))))........... ( -25.10)
>consensus
AUUAUCCGAGCGCAUUUAUCUCGCAUUGGCAAUUGGAUUUGUAAUGUGACUAAAGCCAGACAAAACGACAGGAUAACAAAGCAAUGGCAAUGGUCAUUGAAAAGGACAAU
.((((((...((..(((.((((((((((.(((......))))))))))).........)).))).))...)))))).....(((((((....)))))))........... (-22.14 = -22.00 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 10,750,350 – 10,750,451
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -21.50
Consensus MFE -19.78
Energy contribution -19.98
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.92
SVM decision value 0.23
SVM RNA-class probability 0.642956
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10750350 101 - 27905053
CUACGCCCUCAUCCUCAUCCCCCC------GAGCACUUUCCCUCCGGCUGUCACUUAGUACAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
.............(((........------)))............(((.((((((((((.(((......))).)))))))))).((.....))....)))....... ( -21.10)
>DroSec_CAF1 21188 99 - 1
CUACGCCCCCAUC--CAACCGCCC------GCGCACUUUCCCUCCGGCUGUCACUUAGUACAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
.............--.....((..------..))...........(((.((((((((((.(((......))).)))))))))).((.....))....)))....... ( -20.70)
>DroSim_CAF1 21583 99 - 1
CUACGCCCCCAUU--CAACCCCCC------GCGCACUUUCCCUCCGGCUGUCACUUAGUACAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
...(((.......--.........------)))............(((.((((((((((.(((......))).)))))))))).((.....))....)))....... ( -20.59)
>DroEre_CAF1 22016 104 - 1
CCGCGUAACCACC--CAACGUCCCUCCACAGAGCACU-UCCCUCCGGCUGUCACUUAGAGCAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
..((((.......--.((((...........(((.(.-.......))))(((((((((.(((......)))...)))))))))))))........))))........ ( -20.19)
>DroYak_CAF1 22506 105 - 1
CCCCCCAACCGCC--CAACGUCCCGCCAUCGAGCACUUUCCCUCCGGCUGUCACUUAGUGCAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
.............--.((((....(((...(((........))).))).((((((((((.(((......))).)))))))))))))).................... ( -24.90)
>consensus
CUACGCCCCCAUC__CAACCCCCC______GAGCACUUUCCCUCCGGCUGUCACUUAGUACAUGUCCUUGUGGACUAAGUGACCGUUUCCCACACAUGCCAGUUCAU
.............................................(((.((((((((((.(((......))).)))))))))).((.....))....)))....... (-19.78 = -19.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:53 2006