Locus 3971

Sequence ID 3R_DroMel_CAF1
Location 10,749,528 – 10,749,621
Length 93
Max. P 0.602520
window6368

overview

Window 8

Location 10,749,528 – 10,749,621
Length 93
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 61.52
Mean single sequence MFE -22.67
Consensus MFE -9.64
Energy contribution -9.40
Covariance contribution -0.24
Combinations/Pair 1.33
Mean z-score -1.67
Structure conservation index 0.43
SVM decision value 0.14
SVM RNA-class probability 0.602520
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10749528 93 + 27905053
-----AC--------UAAGUA---------UUGCAUGGAUGGUACAGAAUAUGCUUACUUGCUUUUGACUUAGCCAUAUUUGGCUUAUAACCCGCUAUGUGGGCAGCUUUGCCAA
-----.(--------((.(..---------...).))).(((((.((....(((((((..((.........(((((....)))))........))...))))))).)).))))). ( -24.93)
>DroSec_CAF1 20382 83 + 1
-----AC--------UAAGUA---------CUGUAAAGGUAGUACAGAAAAAGACAA----------ACUUAGCCAUAUGUGGCCAAAAAUCCGCUAUGUGGGCAGCUUCGCCAA
-----..--------...(((---------(((......))))))............----------.......(((((((((........)))).)))))(((......))).. ( -17.80)
>DroSim_CAF1 20783 83 + 1
-----AC--------UAAGUA---------UUUUAAAGUUGGUACAGAAAAAGGAAA----------ACUUAGCCAUAUGUGGCCAAAAAUCCGCCAUGUGGGCAGCUUCGCCAA
-----..--------......---------........(((((..((...(((....----------.))).(((.((((((((.........)))))))))))..))..))))) ( -18.50)
>DroEre_CAF1 21209 112 + 1
CAGAGACCAACUUGGUAGGUACCAUUUAACUUAUAAAGGUAGUAAAGAAAAUGUGGCCU---UUUUGACACAGUCGAAUUUGGCCUAUAACCCGCUAUGUGGCCAGUUUCACCAA
..(((((..((.(((..((((((.((((.....)))))))...........(((((((.---.((((((...))))))...)))).))))))..))).)).....)))))..... ( -26.80)
>DroYak_CAF1 21714 85 + 1
UCCAUACC---------------------------AACGUGGCAGGUACCAUGUGAUCU---UUUCGACAUAGCCAAAUUUGGCCAAUAACCCGCCAUGUGGCCAGUUUCGCCAA
........---------------------------.(((((((.(((...((((((...---..)).)))).((((....)))).....))).)))))))(((.......))).. ( -25.30)
>consensus
_____AC________UAAGUA_________UUGUAAAGGUGGUACAGAAAAUGUGAACU___UUU_GACUUAGCCAUAUUUGGCCAAUAACCCGCUAUGUGGGCAGCUUCGCCAA
.......................................((((.............................((((....)))).......((((...))))........)))). ( -9.64 =  -9.40 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006