Locus 3970

Sequence ID 3R_DroMel_CAF1
Location 10,744,648 – 10,744,760
Length 112
Max. P 0.567089
window6367

overview

Window 7

Location 10,744,648 – 10,744,760
Length 112
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 80.83
Mean single sequence MFE -36.67
Consensus MFE -22.15
Energy contribution -23.65
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -1.70
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.567089
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10744648 112 - 27905053
CGCAGGUCCGCAAUCUUAUUUAUCUCCAACGAUCCGCAGGCGGUUUGAUCAUCGGAACUGGCCAAAACCGGCGAU---GAGGCGCCCAAAAACAGCAGUAUCAACGGAACUGCGA
(((((.(((((..................(((.(((....))).))).((((((...((((......))))))))---)).))((.........)).........))).))))). ( -31.70)
>DroSec_CAF1 15514 112 - 1
CGCAGUUCCGCAAUCUCAUUUAUUUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCGAAACCGGCGAU---GCGUCGCCCAAAAACAGCAAUAACAGCGGAACUGCGA
(((((((((((.................(((...)))..((((((((((((.......))))).)))))(((((.---...)))))........)).......))))))))))). ( -46.40)
>DroSim_CAF1 15925 112 - 1
CGCAGGUCCGCAAUCUCAUUUAUCUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGCU---GCGGCGCCCAAAAACAGCAAUAACAGCGGAACUGUGA
(((((.(((((.................(((..((((((((((((((((((.......))))).))))).)).))---))))))).........(......).))))).))))). ( -42.70)
>DroEre_CAF1 16165 112 - 1
CGCAAGUCCGCAAUCUCAUUUAUCUCCAGCGAUUCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU---GCGGCACCCAAAAACAGAAAUAACAGCGGAACUGCGA
((((..(((((..........(((......)))((((((.(((((((((((.......))))).)))))).)..)---)))).....................)))))..)))). ( -35.90)
>DroYak_CAF1 16580 112 - 1
CGCAAGUCCGCAAUCUCAUUUAUCUCCUGCGAUCCGCAGACUGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU---GCGGCGCCCAAAAACAGAAAUAACAGCGGAACUGCGA
((((..(((((...............(((((...))))).((((((((.(..((.(((..(((......))))))---.))..).)))..)))))........)))))..)))). ( -39.70)
>DroAna_CAF1 15137 104 - 1
CGAAAGUCCCCGAUAUCAUUGAUCUCCAGCGAUCCGCAAGCCGGUCCAUUUUCGGAUCUGACCAAAAGGGGGCACAGAGCGAGAGUAAGACACAGAAACAGCCG-----------
.....((((((.........((((......))))........(((((......))))).........)))))).....((....))..................----------- ( -23.60)
>consensus
CGCAAGUCCGCAAUCUCAUUUAUCUCCAGCGAUCCGCAGGCGGUUUGGUCAUCGGAUCUGGCCAAAACCGGCGAU___GCGGCGCCCAAAAACAGAAAUAACAGCGGAACUGCGA
((((..(((((...................((((((..(((......)))..))))))..(((......)))...............................)))))..)))). (-22.15 = -23.65 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:51 2006