| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,738,740 – 10,738,832 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 10,738,740 – 10,738,832 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.53 |
| Mean single sequence MFE | -25.26 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.82 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10738740 92 - 27905053 GGCCACGAGGCGUAUACUUCAUUUAUUGGCCACAUUUCUGGCACAACGCUUCACUGAGCUAAGUACUU------UUCUGGCCACCGGUAAAGCCUAAG (((((.(((((((......((.....))((((......))))...)))))))(((......)))....------...)))))...((.....)).... ( -26.80) >DroSec_CAF1 9805 92 - 1 GGCCACGAGGCGUAUACUUCAUUUAUUGGCCACAUUUCUGGCACAAUGCUUCACUGAGCUCAGUACUU------UUCUGGCCAACGGAAAAGCCUAAG (((((.(((((((......((.....))((((......))))...)))))))((((....))))....------...)))))...((.....)).... ( -26.70) >DroSim_CAF1 9972 92 - 1 GGCCACGAGGCGUAUACUUCAUUUAUUGGCCACAUUUCUGGCACAAUGCUUCACUGAGCUCAGUACUU------UUCUGGCCAACGGAAAAGCCUAAG (((((.(((((((......((.....))((((......))))...)))))))((((....))))....------...)))))...((.....)).... ( -26.70) >DroEre_CAF1 9920 75 - 1 GGCUACGGGGCGUAUACUUCAUUUAUUGGCCACAUUUCGGGCACAGUACUU-----------------------UUCUGGCCACCGGAAAAGCCUAAG ((((.((((((............((((((((........))).)))))(..-----------------------....)))).)))....)))).... ( -22.10) >DroYak_CAF1 10030 98 - 1 GGCUACGGUGCGUAUACUUCAUUUAUUGGCCACAUUUCGGGCACAAUGCUUCACUGAGUUCAGUACUUCAGUACUUCUGGCCACCUGAAAAGCCUAAG (((((.(((((............((((((((........))).)))))....((((....))))......)))))..)))))..((....))...... ( -24.00) >consensus GGCCACGAGGCGUAUACUUCAUUUAUUGGCCACAUUUCUGGCACAAUGCUUCACUGAGCUCAGUACUU______UUCUGGCCACCGGAAAAGCCUAAG (((((.(((((((......((.....))(((........)))...)))))))((((....)))).............)))))................ (-18.62 = -18.82 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:49 2006