Locus 3966

Sequence ID 3R_DroMel_CAF1
Location 10,726,997 – 10,727,105
Length 108
Max. P 0.714718
window6362

overview

Window 2

Location 10,726,997 – 10,727,105
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -37.58
Consensus MFE -22.10
Energy contribution -21.58
Covariance contribution -0.52
Combinations/Pair 1.39
Mean z-score -1.81
Structure conservation index 0.59
SVM decision value 0.38
SVM RNA-class probability 0.714718
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10726997 108 - 27905053
UGCCGGCCCAGG---AGGUCACCGAGUGGCCGGAAAUCAAGCUUUUCGGGCGCUGGGCCUGCGACGACAUCUCCAUCAGCGACAUCUCGCUGCAGGACUACAUUGCCGUAA
.((.(((((.((---......)).((((.(((((((......))))))).))))))))).)).(((.((..(((..((((((....))))))..)))......)).))).. ( -42.70)
>DroPse_CAF1 2622 108 - 1
UAACCUAUCAGC---AAGCCAAUGAGUGGCCUGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAGGUGAUAUUUCGUUGCAAGACUACAUUGCCGUGA
..........((---(((((....(((((((.((((.......))))))))))).))).((((((((.((((((....).))))).))))))))........))))..... ( -35.50)
>DroEre_CAF1 2928 108 - 1
UGCCCGCCCAGC---AGGCCACCGAGUGGCCGGAAAUCAAGCUCUUUGGUCGCUGGGCCUGCGACGACAUCUCCAUUAGCGACAUCUCGCUGCAGGACUACAUCGCCGUGA
.....(((((((---.((((((...))))))....((((((...)))))).)))))))..(((.(((....(((..((((((....))))))..))).....))).))).. ( -41.50)
>DroMoj_CAF1 3106 108 - 1
U---CGACCAGCCAGCCAUCAAUGAGUGGCCCGAAAUUAAGAUAUUCGGCCGCUGGAGCUGCGAUGAAAUUACAAUUAGUGACAUUUCGCUGCAAGAUUACAUCGCUGUCA
.---...(((((..(((((......)))))(((((.........)))))..))))).((.((((((.((((.....((((((....))))))...)))).)))))).)).. ( -33.50)
>DroAna_CAF1 3754 108 - 1
UACCGGCCCAAC---AAGCCAACGAAUGGCCGGAGAUUAAGCUUUUUGGUCGUUGGGGCUGCGAUGAUAUUUCCAUCAGCGACAUUUCGCUGCAGGACUACAUUGCCGUGA
....(.((((((---..((((.....))))....(((((((...))))))))))))).).((((((.((..(((..((((((....))))))..))).))))))))..... ( -36.80)
>DroPer_CAF1 2621 108 - 1
UAGCCUAUCAGC---AAGCCAAUGAGUGGCCUGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAGGUGAUAUUUCGUUGCAAGACUACAUUGCCGUGA
..........((---(((((....(((((((.((((.......))))))))))).))).((((((((.((((((....).))))).))))))))........))))..... ( -35.50)
>consensus
UACCCGACCAGC___AAGCCAACGAGUGGCCGGAAAUCAAGCUUUUCGGCCGCUGGGCCUGCGAUGACAUAUCCAUAAGCGACAUUUCGCUGCAAGACUACAUUGCCGUGA
.................(((....(((((((.((((.......))))))))))).)))..((((((.....((...((((((....))))))...))...))))))..... (-22.10 = -21.58 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:45 2006