Locus 3956

Sequence ID 3R_DroMel_CAF1
Location 10,701,137 – 10,701,232
Length 95
Max. P 0.979844
window6341

overview

Window 1

Location 10,701,137 – 10,701,232
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -30.66
Consensus MFE -29.28
Energy contribution -29.52
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 1.85
SVM RNA-class probability 0.979844
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10701137 95 + 27905053
UCGAGCCGAAAACGUGGGAAAACGCGGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGCAGCAGC---
....((((....(((((((((((((((((.....))).)))))).))))))))..............(((....))).....)))).........--- ( -33.80)
>DroSec_CAF1 42527 92 + 1
UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC---
....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))...---...--- ( -31.30)
>DroSim_CAF1 45726 92 + 1
UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC---
....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))...---...--- ( -31.30)
>DroEre_CAF1 39786 92 + 1
UCGAGCCGAAAACGUGGGGAAACGCAGUCAGGAACGCGCGCGUUGUUCUCGCGCCAACAGCAAUCCAGGCACUGGCCAAAAACGGCAGC---AGC---
....((((.....((((((((((((.((.......))..))))).)))))))((((...((.......))..))))......))))...---...--- ( -28.20)
>DroYak_CAF1 34988 95 + 1
UCGAGCCGAAAACGUGGGAAAACGCAGUCAAGAACGCGCGCGUUGUUCUCGCGCCAACAGCAAUCCAGGCACUGGCCAAAAACGGCAGC---AGCAGC
....((((.....((((((((((((.((.......))..))))).)))))))((((...((.......))..))))......))))...---...... ( -28.70)
>consensus
UCGAGCCGAAAACGUGGGAAAACGCAGUGAAGAACGCGCGCGUUGUUCUCGCGCCAACAACAAUCCAGGCACUGGCCAAAAACGGCAGC___AGC___
....((((....(((((((((((((.(((.....)))..))))).))))))))..............(((....))).....))))............ (-29.28 = -29.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:25 2006