| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,693,253 – 10,693,359 |
| Length | 106 |
| Max. P | 0.534136 |
| Location | 10,693,253 – 10,693,359 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 87.84 |
| Mean single sequence MFE | -27.69 |
| Consensus MFE | -21.76 |
| Energy contribution | -23.54 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10693253 106 - 27905053 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGCCAU (-....)((((((...((((((((((.........(((((((((...........)))))))))......)))))).)))))))))).............-....... ( -31.36) >DroSec_CAF1 34599 106 - 1 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUUGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGUCAU .-..(((((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))....((.......-))))).. ( -30.16) >DroSim_CAF1 36622 106 - 1 G-GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU-UGGUCAU .-..(((((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))....((.......-))))).. ( -32.56) >DroEre_CAF1 32074 105 - 1 GA--GACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGCGCGCACAGCACACUUCACAUUCAUCU-UGUUCAU ..--((.((((((...((((((...(((((.....(((((((((...........)))))))))....))))).)).)))))))))).))..........-....... ( -27.70) >DroYak_CAF1 27054 108 - 1 GAGAGACGUGUGCAUUUGUGGCUUCUUCAACUCAAUAUUUGCUCGCCCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCUUUGUUCAU .......((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))..................... ( -29.86) >DroAna_CAF1 10750 94 - 1 A--AGACGUGUGCAUUUGUGGCUUUGCCAAUUCAAUAUUUACUUGCA-AAACCGACAGCAAAUAAUUUUCG----------GCAUACUAUACAUUCAUCU-UGAUCAU .--....((((((.....((((...)))).........(((.((((.-.........)))).)))......----------)))))).............-....... ( -14.50) >consensus G_GAGACGUGUGCAUUUGUGGCUUCUUCAAUUCAAUAUUUGCUCGCUCAAAUUCAGGGCAAAUAAUUUUUGGGAGCGCACAGCACACUACACAUUCAUCU_UGGUCAU .......((((((...((((((((((.........(((((((((...........)))))))))......)))))).))))))))))..................... (-21.76 = -23.54 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:20 2006