| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,679,191 – 10,679,305 |
| Length | 114 |
| Max. P | 0.756553 |
| Location | 10,679,191 – 10,679,305 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 92.77 |
| Mean single sequence MFE | -32.16 |
| Consensus MFE | -26.74 |
| Energy contribution | -26.58 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10679191 114 - 27905053 CUAAGCCAAACAACGCAGAAUUUGGCGGAUCUCCAAAGUUUGCACAAGCCAUUUCUACGAAC-ACAAGCGGUC---AGGCGGCACUGGAUACAAAAGUAUCUCGCAACCACUAAGGUA ....(((......((.((((..((((((....))...((....))..)))).)))).))...-...((.(((.---..(((.....((((((....))))))))).))).))..))). ( -28.20) >DroSec_CAF1 20491 115 - 1 CUAAGCCAAACAACGCAGAAUUUGGCGGAUCUCCAAAGUUUGCAGAAGCCAUUUCUACGAACGACAAGCGGUC---AGGCGGCACUGGAUACGAAAGUAUCUCGCAACCAGCAAGGUA ....(((......((.((((..((((...(((.((.....)).))).)))).)))).))........(((((.---..(((.....((((((....))))))))).))).))..))). ( -33.00) >DroSim_CAF1 22500 115 - 1 CUAAGCCAAACAACGCAGAAUUUGGCGGAUCUCCAAAGUUUGCACAAGCCAUUUCUACGAACGACAAGCGGUC---AGGCGGCACUGGAUACGAAAGUAUCUCGCAACCAGCAAGGUA ....(((......((.((((..((((((....))...((....))..)))).)))).))........(((((.---..(((.....((((((....))))))))).))).))..))). ( -32.80) >DroEre_CAF1 17683 112 - 1 CUUUGCCAAACAACGCAGAAUUUGGCGGAUCUCCAGAGUUUGUACAAGCCAUUUCUACGAACGA---GCGGUC---AGGCGGCGCUGAAUACGAAAGUAUCUCGCAACCAGCAAGGUA ((((((.......(((((((..((((((....))...((....))..)))).)))).(....).---)))...---.((..(((..((.(((....))))).)))..)).)))))).. ( -32.40) >DroYak_CAF1 12620 118 - 1 CUUUGCCAAACAACGCAGAAUUUGGCGGAUCUCCAGAGUUUGCACAAGCCAUUUCUACGAACGACAAGUGGUCGAAAGGCGGCGCUGAAUACGAAAGUAUCUCGCAACCAGUAAGGUA ....(((.......(((((.(((((.......))))).)))))....(((.((((.((..((.....)).)).))))))))))((.((((((....)))).)))).(((.....))). ( -34.40) >consensus CUAAGCCAAACAACGCAGAAUUUGGCGGAUCUCCAAAGUUUGCACAAGCCAUUUCUACGAACGACAAGCGGUC___AGGCGGCACUGGAUACGAAAGUAUCUCGCAACCAGCAAGGUA ....(((.......(((((.(((((.......))))).)))))....(((.......((.........)).......))))))...((((((....))))))....(((.....))). (-26.74 = -26.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:16 2006