Locus 395

Sequence ID 3R_DroMel_CAF1
Location 1,475,434 – 1,475,553
Length 119
Max. P 0.541836
window651

overview

Window 1

Location 1,475,434 – 1,475,553
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.46
Mean single sequence MFE -43.70
Consensus MFE -29.07
Energy contribution -29.02
Covariance contribution -0.05
Combinations/Pair 1.38
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.541836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1475434 119 - 27905053
AGACGGGCGGCAUGGUGGGGGCCCGUGUAAUAGUAUACUCAAUAGUGCUGAAUCCCGGAAUCAGCUCCGCUGGUUGGUGCUGCUCGGAAAUGGCAGCAUAUUGAGGGGGAAACUGGAAU
..((((((..(......)..))))))...........(((((((.(((((....((((...((((.(((.....))).)))).))))......)))))))))))).((....))..... ( -40.20)
>DroVir_CAF1 9171 119 - 1
ACACGGGCGGCAUUGUCGGCGCCCUGGUAAUGGUGUACUCAAUGGUACUGAAACCAGGUAUCAGUUCCGCUGGCUGAUGCUGCUCCGAUAUGGCUGCAUAUUGUGGAGGAAACUGGAAU
.((((((((((((((((((((..((((((.(((((((((....)))))....))))..))))))...))))))).)))))))).))((((((....))))))))).((....))..... ( -49.30)
>DroGri_CAF1 9395 119 - 1
AAACGGGCGGCAUCGUCGGUGCUCGGGUAAUGGUGUACUCAAUGGUGCUGAAACCGGGAAUCAGCUCGGCAGGCUGGUGCUGCUCCGAUAUGGCUGCAUAUUGUGGCGGAAACUGUGAU
...(((((((((((.((((..((.(((((......)))))...))..))))..(((((......)))))......)))))))).))).....((..(.....)..))(....)...... ( -44.30)
>DroWil_CAF1 8638 119 - 1
ACACCGGUGGCAUUGUUGGAGCCCGGACGAUAGUGUACUCAAUUGUGCUGAAGCCCGGGAUCAGCUCAGCCGGCUGAUGCUGCUCCGAAAUAGCCGCAUAUUGCGGGGGGAACUACAAU
...((((((((....(((((((((((.(..(((..((......))..)))..).)))))..((((((((....)))).))))))))))....)))))......)))((....))..... ( -43.70)
>DroMoj_CAF1 10171 119 - 1
AGACAGGCGGCAUUGUGGCCGCCCUGGCGAUGGUGUAUUCGAUGGUACUGAAGCCAGGUAUCAGCUCAGCGGGCUGAUGUUGCUCCGAUAUGGCUGCAUAUUGUGGAGGAAACUGAAAU
...((((((((......)))))((((((......((((......))))....))))))((((((((.....))))))))((.((((((((((....))))))..)))).)).))).... ( -45.20)
>DroAna_CAF1 8646 119 - 1
AGACUGGCGGCAUAGUGGGUGCCCUGGUGAUGGUGUACUCUAUGGUGCUGAAUCCUGGAAUUAGCUCCGCAGGCUGGUGCUGCUCCGAUAUGGCGGCAUAUUGAGGGGGGAACUGUAAA
..((..((.((.....((((((((.......)).))))))...((.(((((.((...)).))))).))))..))..)).((.((((((((((....))))))).))).))......... ( -39.50)
>consensus
AGACGGGCGGCAUUGUGGGCGCCCGGGUAAUGGUGUACUCAAUGGUGCUGAAACCAGGAAUCAGCUCCGCAGGCUGAUGCUGCUCCGAUAUGGCUGCAUAUUGUGGGGGAAACUGGAAU
.....((((((...........((((((......((((......))))....)))))).(((((((.....))))))))))))).(((((((....)))))))...((....))..... (-29.07 = -29.02 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:11 2006