Locus 3947

Sequence ID 3R_DroMel_CAF1
Location 10,677,281 – 10,677,401
Length 120
Max. P 0.834557
window6327

overview

Window 7

Location 10,677,281 – 10,677,401
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.50
Mean single sequence MFE -28.10
Consensus MFE -21.29
Energy contribution -21.93
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -1.97
Structure conservation index 0.76
SVM decision value 0.73
SVM RNA-class probability 0.834557
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10677281 120 + 27905053
UAGGAUAAAGUGCCAUUAGAUUUAAACGAGACUUUAUUUGUAGUGUUAGGUGUUUGGAAUGGGCCUUAAACACCUUUUCGUUGCAUUAAAAAUGUAUUAUUUAAAUCAAAUGGUGUAAAU
.........(..(((((.((((((((..(.((......(((((((..((((((((((........))))))))))...)))))))........)).)..)))))))).)))))..).... ( -31.14)
>DroSec_CAF1 18634 120 + 1
UAGGAUAAAGUGCCAUUAGAUUUUAACGAGGCUUUAUUUGUAGUGUUAGGUGUUUGAAAUGGGUCUUAAACACCUUUUCGUUCCAUCAGAAAUUUAUUAUUUAAAUCAAAUGGUGUAAAG
.........(..(((((.((((((((((..((.......))..)))))(((((((((........)))))))))............................))))).)))))..).... ( -25.40)
>DroSim_CAF1 20688 120 + 1
UAGGAUAAAGUGCCAUUAGAUUUUAACGACGCUUUAUUUGUAGUGUUACGUGUUUGAAAUGGGUCUUAAACACCUUUUCAUUCCAUUAGAAAUUUAUUAUUUAAAUCAAAUGGUGUAAAG
.........(..(((((.(((((....((((((........))))))..((((((((........)))))))).............................))))).)))))..).... ( -22.60)
>DroEre_CAF1 15857 120 + 1
UAAGAUAAAGUGCCAUUGGAUUUUAACGAGUCUUUAUUUGUAGUUUUAGGUGUUUGAAAUGGGUUUUAAACACCUUUUCGUUGCAUAGCUCAUAAAUUAUUGAAAUAAAAUGGCAUAAAG
.........((((((((..(((((((..(.........(((((....((((((((((((....)))))))))))).....)))))...........)..)))))))..)))))))).... ( -32.05)
>DroYak_CAF1 10737 120 + 1
UAAGAUAAAGUGCCAUUGGAUUUUAACGAGUCUUUGUCUGUAGUGUUUGGUGUUUGAAAUGGGCUUUAAACACCUUUUCGUUGCAUAGCACAUAAAUUAUUUCAGUAUAAUGGCAUCAAG
.........((((((((((((((....)))))(((((.(((.((((..((((((((((......))))))))))........)))).))).)))))...........))))))))).... ( -29.30)
>consensus
UAGGAUAAAGUGCCAUUAGAUUUUAACGAGGCUUUAUUUGUAGUGUUAGGUGUUUGAAAUGGGUCUUAAACACCUUUUCGUUGCAUAACAAAUAUAUUAUUUAAAUCAAAUGGUGUAAAG
..........(((((((.(((((.((..(.........(((((((..((((((((((........))))))))))...)))))))...........)..)).))))).)))))))..... (-21.29 = -21.93 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:11 2006