| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,676,240 – 10,676,347 |
| Length | 107 |
| Max. P | 0.756611 |
| Location | 10,676,240 – 10,676,347 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -34.13 |
| Consensus MFE | -24.01 |
| Energy contribution | -26.15 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10676240 107 - 27905053 ------CAUUUCUUGGCUUGGCUUU--GGGUUGGGCUUUUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCGAAA-----ACAGUAAUCAAGCUAAAU ------......(((((((((...(--(((((...(..((((((((........)))))))).)...))))))...........((((.........-----.))))..))))))))).. ( -34.80) >DroSec_CAF1 17612 106 - 1 ------CAUUUCUUGGCUUGAACUU--GGGUUGGGCU-UUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCAAAA-----ACUGUAAUCAAGCCAAAU ------......(((((((((...(--(((((...(.-((((((((........)))))))).)...)))))).(((((......))))).......-----.......))))))))).. ( -39.00) >DroSim_CAF1 19650 107 - 1 ------CAUUUCUUGGCUUGGACUU--GGGUUGGGCUUUUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCGAAA-----ACUGUAAUCAAGCCAAAU ------......(((((((((((.(--(((((...(..((((((((........)))))))).)...))))))...(((......))))))(((...-----..)))...)))))))).. ( -37.30) >DroEre_CAF1 14835 107 - 1 ------CAUUUCUGGGCUUGGGUUU--GGGUUGGGCUUUUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCAAAA-----AGUGUAAUCAAGCCAAAU ------........(((((((((.(--(((((...(..((((((((........)))))))).)...)))))).))).......((.....))....-----........)))))).... ( -35.70) >DroWil_CAF1 22179 110 - 1 UAGUCUCAAUUUUGGAAUCUGUUUUGAGGGUUUGACAUUUG----GUCAGAUGUCUAGGCAGAGAUAAA---ACUUUAGCUUUGGC---UCGCAAAACGUCGACUUUAAUCAAGUCAAAU ....................((((((.(((((.(((((((.----...))))))).((((((((.....---.)))).)))).)))---)).))))))...(((((.....))))).... ( -25.10) >DroYak_CAF1 9672 107 - 1 ------CAUUUCUGGGCUGGCGUUU--GGGUUGGGCUUUUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCGAAA-----ACUGUAAUCAAGCCAAAU ------........((((.(((..(--(((((...(..((((((((........)))))))).)...)))))).(((((......))))))))....-----..((....)))))).... ( -32.90) >consensus ______CAUUUCUGGGCUUGGAUUU__GGGUUGGGCUUUUGGCCGGUUAGAUGUCUGGCCAGUGAUAAACCCACAUCAGAAUAAGCUGGUCGCAAAA_____ACUGUAAUCAAGCCAAAU ..............(((((((......(((((......((((((((........)))))))).....)))))..(((((......)))))...................))))))).... (-24.01 = -26.15 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:08 2006