| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,674,345 – 10,674,453 |
| Length | 108 |
| Max. P | 0.971854 |
| Location | 10,674,345 – 10,674,453 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 93.59 |
| Mean single sequence MFE | -30.66 |
| Consensus MFE | -27.14 |
| Energy contribution | -27.18 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10674345 108 + 27905053 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU--------A--UAUGCGAUCCAUUAUUAUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.(((((((((...--------.--..)))...((((....)))).......)))))).)..))))))..))))))).. ( -28.20) >DroSec_CAF1 15726 108 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUUGCUGCCGUAAAU--------A--UAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.((((((((.(((..--------.--..((((((.....))))))....))).))))))))..))))))..))))))).. ( -31.30) >DroSim_CAF1 17307 110 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU--------AUAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..--------.....((((((.....))))))....))).)))))).)..))))))..))))))).. ( -28.40) >DroEre_CAF1 13085 118 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAUGCACACAUAAAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..((.((((...................))))))..))).)))))).)..))))))..))))))).. ( -32.71) >DroYak_CAF1 7810 118 + 1 UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAUGCACACAUAAAUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((...(((..((((((((....))))))...((((.(.((((((.(((..((.((((...................))))))..))).)))))).)..))))))..))))))).. ( -32.71) >consensus UGAAAAUUGCGUGCAAUUAUCCAAAGAUGAUAUCAGCAUUGGCUGCCGUAAAU________A_AUAUACGAUCCAUUAUUGUGGCCCUUGGGGCAGCGAUUUGUUUGUGUGCUUUCUU .((((.(((((.((.((((((....))))))...(((....)))))))))).............(((((((..((..(((((.((((...)))).))))).)).))))))).)))).. (-27.14 = -27.18 + 0.04)
| Location | 10,674,345 – 10,674,453 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 93.59 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -21.01 |
| Energy contribution | -21.21 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10674345 108 - 27905053 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCAUAAUAAUGGAUCGCAUA--U--------AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............(((((((....).((((....))))........--.--------......))))))...(((...((((.......))))...))).))...)))). ( -20.80) >DroSec_CAF1 15726 108 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUA--U--------AUUUACGGCAGCAAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((..--.--------...)))))))))...(((...((((.......))))...))).))...)))). ( -24.20) >DroSim_CAF1 17307 110 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUAU--------AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((.....--------...)))))))))...(((...((((.......))))...))).))...)))). ( -23.10) >DroEre_CAF1 13085 118 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUUUAUGUGUGCAUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ((((..((((((............((((...)))).......((((((.....)))))))))))).....(((((.....)))))......))))..((.(((((....))))).)). ( -27.50) >DroYak_CAF1 7810 118 - 1 AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAUUUAUGUGUGCAUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ((((..((((((............((((...)))).......((((((.....)))))))))))).....(((((.....)))))......))))..((.(((((....))))).)). ( -27.50) >consensus AAGAAAGCACACAAACAAAUCGCUGCCCCAAGGGCCACAAUAAUGGAUCGUAUAU_U________AUUUACGGCAGCCAAUGCUGAUAUCAUCUUUGGAUAAUUGCACGCAAUUUUCA ..((((((.............((((((....(..(((......)))..)(((................)))))))))...(((...((((.......))))...))).))...)))). (-21.01 = -21.21 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:59 2006