| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,674,009 – 10,674,108 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 10,674,009 – 10,674,108 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 95.41 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -28.25 |
| Energy contribution | -28.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10674009 99 + 27905053 AAUGAAGGAAAUGCAAUGUCGUUAACAUGGCUCGUAGGUUUGGCUUGCUAGCUCGGUUGGCUGGCGGGUGGAAAUAAGUCAGGUUGGCAGCCAGUAU----AC ..........((((...((.((((((.(((((..(...(((.(((((((((((.....))))))))))).))))..))))).)))))).))..))))----.. ( -31.90) >DroSec_CAF1 15385 103 + 1 AAUGAAGGAAAUGCAAUGUCGUUAACAUGGCUCGUAGGUUUGGCUUGCUAGCUUGGUUGGCUGGCGGGUGGAAAUAAGGCAGGUUGGCAGCCAGUAUACAUAC ..........((((...((.((((((...(((..((..(((.(((((((((((.....))))))))))).))).)).)))..)))))).))..))))...... ( -31.40) >DroSim_CAF1 16970 99 + 1 AAUGAAGGAAAUGCAAUGUCGUUAACAUGACUCGUAGGUUUGGCUUGCUAGCUCGGUUGGCUGGCGGGUGGAAAUAAGGCAGGUUGGCAGCCAGUAU----AC ......((...(((.((((.....))))(((..((...(((.(((((((((((.....))))))))))).))).....))..))).))).)).....----.. ( -29.70) >consensus AAUGAAGGAAAUGCAAUGUCGUUAACAUGGCUCGUAGGUUUGGCUUGCUAGCUCGGUUGGCUGGCGGGUGGAAAUAAGGCAGGUUGGCAGCCAGUAU____AC ......((...(((.((((.....))))(((..((...(((.(((((((((((.....))))))))))).))).....))..))).))).))........... (-28.25 = -28.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:57 2006