Locus 3939

Sequence ID 3R_DroMel_CAF1
Location 10,673,549 – 10,673,658
Length 109
Max. P 0.869414
window6311

overview

Window 1

Location 10,673,549 – 10,673,658
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 93.39
Mean single sequence MFE -34.66
Consensus MFE -32.16
Energy contribution -32.20
Covariance contribution 0.04
Combinations/Pair 1.09
Mean z-score -1.31
Structure conservation index 0.93
SVM decision value 0.86
SVM RNA-class probability 0.869414
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10673549 109 - 27905053
AUUUUCUCUCAAUGUUCCCCCUUUCUGGGUUGGCUUGAAAAUGGGGCCCCCAGAUGAUUGUUGUGGCAUGAAUACGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA
.(((((((.((((((........((((((..(((((.......)))))))))))....(((....))).....)))))))))))))((((.((((...)))).)))).. ( -33.40)
>DroSec_CAF1 14908 109 - 1
AUUUUCUCUCAAUGUUCCCCUUUUCUGGGUUGGCCUGAAAACGGGGCCUCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCAAGUGACCAA
.(((((((.(((((..(((.(((((.(((....)))))))).)))(((....(((....)))..))).......))))))))))))(((((((......))).)))).. ( -31.30)
>DroSim_CAF1 16494 109 - 1
AUUUUCUCUCAAUGUUCCCCUUUGCUGGGUUGGCCUGAAAACGGGGCCUCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCCUCGAUUCGAGUGACCAA
.(((((((.(((((...(((......)))..(((((.......)))))....(((...(((....)))...)))))))))))))))(((..((((...))))..))).. ( -34.70)
>DroEre_CAF1 12258 108 - 1
AUUUUCUCUCAAUGUUCCCCU-UUCUGGUUUGGCCUGAAGAAGGGGCCCCCAGAUGAUUGUUGUGGCACGAAUCCGUUGGAGGAAAGGUUCCUCGCUUCGAGUGACCAA
.(((((((.(((((.......-.(((((...(((((.......))))).))))).((((((......)).))))))))))))))))(((..((((...))))..))).. ( -35.20)
>DroYak_CAF1 6982 108 - 1
AUUUUCUCUCAAUGUUCCCCU-UUCUGGGCUGGCCUGAAAAUGGGGCCCCCAGAUGCUUGUUGUGGCACGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA
.(((((((.((((((((....-.((((((..(((((.......)))))))))))((((......)))).)))..))))))))))))((((.((((...)))).)))).. ( -38.70)
>consensus
AUUUUCUCUCAAUGUUCCCCUUUUCUGGGUUGGCCUGAAAACGGGGCCCCCAGAUGAUUGUUGUGGCAUGAAUCCGUUGGAGGAAAGGUUCUUCGAUUCGAGUGACCAA
.(((((((.(((((.........((((((..(((((.......)))))))))))....(((....)))......))))))))))))(((..((((...))))..))).. (-32.16 = -32.20 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006