| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,672,470 – 10,672,561 |
| Length | 91 |
| Max. P | 0.876936 |
| Location | 10,672,470 – 10,672,561 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.46 |
| Mean single sequence MFE | -21.85 |
| Consensus MFE | -17.90 |
| Energy contribution | -18.27 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.876936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10672470 91 - 27905053 -GGCUGCUUCACAUGAGGUAG------UAUACUUGAUAAAUAAUAGCCAACAUCCAGGGGGGCGUAGGUUUAAUAAUAACCCGAAGAAAAAAACAAAA----------- -.((((((((....)))))))------)...(((...........(((..(......)..)))...((((.......))))..)))............----------- ( -19.10) >DroSec_CAF1 13892 88 - 1 GGGCUGCUUCACAUGAGGUAG------UAUACUUGAUAAAUAAUAGCCAACUUCCAGGGGGGCGUAGGAUUAAUAAUAAUCUGAAGCAAAAAAC--------------- ..((((((((....)))))))------).................(((..((....))..)))((.((((((....))))))...)).......--------------- ( -21.30) >DroSim_CAF1 15441 88 - 1 GGGCUGCUUCACAUGAGGUAG------UAUACUUGAUAAAUAAUAGCCAACUUCCAGGGGGGCGUAGGAUUAAUAAUAAUCUGAAGCAAGAAAC--------------- ..((((((((....)))))))------)...((((..........(((..((....))..)))...((((((....))))))....))))....--------------- ( -23.70) >DroEre_CAF1 11170 103 - 1 G--GUGCAUCACAUGAGGUGGUAGUCGUAUACUUGAU----AUUGGCCAACUUCCAAGGGGGCGUAGGAUUAAUAAUAAUCUGAAGCAGAGAAGAUAGGUGGGUAUGGG .--((((.((((..((((((((.((((......))))----....))).))))).......((...((((((....))))))...))...........))))))))... ( -23.30) >consensus GGGCUGCUUCACAUGAGGUAG______UAUACUUGAUAAAUAAUAGCCAACUUCCAGGGGGGCGUAGGAUUAAUAAUAAUCUGAAGCAAAAAAC_______________ ....((((((((((.(((((.........))))).))........(((..(......)..))))).((((((....))))))))))))..................... (-17.90 = -18.27 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:55 2006