Locus 3934

Sequence ID 3R_DroMel_CAF1
Location 10,670,026 – 10,670,122
Length 96
Max. P 0.621780
window6300

overview

Window 0

Location 10,670,026 – 10,670,122
Length 96
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 91.44
Mean single sequence MFE -19.27
Consensus MFE -15.85
Energy contribution -15.35
Covariance contribution -0.50
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.621780
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10670026 96 - 27905053
UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCUAUUGAGCUAAAAAGGUAUU-UAAAUA-AAAGU
.(((((....)))))((((((......((((((((.........(((....)))..........))))))))........)))))-).....-..... ( -17.85)
>DroSim_CAF1 13034 96 - 1
UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCCAUUGAGCUAAAAAGGGAUU-UCAAUA-AAAGC
.((((..((.(((((((.(((...))).(((..((((((...))))))..)))..............)))))))....))..)))-).....-..... ( -18.80)
>DroEre_CAF1 8671 97 - 1
UGAGUUUCUGAGCUCGAAUGCGUUGCACUCAAUGGAAAUAAUAUUUCUUUUGCAUUUAAAACAGCUUUUGAGUUGAAAAGGAAUU-UAAAUAAAAAGC
(((((((((.((((((((.(((((.....(((.((((((...)))))).))).......))).)).))))))))....)))))))-)).......... ( -21.20)
>DroYak_CAF1 3307 98 - 1
UGAGUUUCUGAGCUCGAAUGCGUUGCACUCAAUAGAAAUAAUAUUUCUCCUGCAUUUAAAACAGCCAUUGAGCUAAAAAGGAAUUUUUAAUAAAAAGC
.((((((((.(((((.((((.((((....((..((((((...))))))..)).........)))))))))))))....))))))))............ ( -19.22)
>consensus
UGAGUUUCUGAGCUCGAAUGCAUUGCACUCAAUAGAAAUAAUAUUUCUCCUGAAUUUAAAACAGCCAUUGAGCUAAAAAGGAAUU_UAAAUA_AAAGC
..(((((((.(((((((..((((((....))))((((((...))))))...............))..)))))))....)))))))............. (-15.85 = -15.35 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:45 2006