| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,669,060 – 10,669,154 |
| Length | 94 |
| Max. P | 0.834055 |
| Location | 10,669,060 – 10,669,154 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 95.82 |
| Mean single sequence MFE | -19.34 |
| Consensus MFE | -16.02 |
| Energy contribution | -16.14 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10669060 94 + 27905053 AUCAAUUAAGGUAAGCAACAAUGCUUUCUAUUGUCCCCCCCAGUCCAGCGAUUCUGCUGUCUCAUAGGGUCGGACCGCCACUUUCCAUCAUCCA .........((((((((....)))))......((((..(((((..(((((....))))).))....)))..)))).)))............... ( -21.80) >DroSec_CAF1 10737 93 + 1 AUCAAUUAAGGUAAGCUACAAUGCUUUCUAUUGUCCC-CCCAGUCCAGCGAUUCUGCUGUCUCAUAGGGUCGGACCGCCACUUUCCAUCAUCCA .........(((((((......))))......((((.-(((((..(((((....))))).))....)))..)))).)))............... ( -20.00) >DroSim_CAF1 12045 93 + 1 AUCAAUUAAGGUAAGCAACAAUGCUUUCUAUUGUCCC-CCCAGUCCAGCGAUUCUGCUGUCUCAUAGGGUCGGACCGCCACUUUCCAUCAUCCA .........((((((((....)))))......((((.-(((((..(((((....))))).))....)))..)))).)))............... ( -20.20) >DroEre_CAF1 7638 92 + 1 AUCAAUUAAGGUAAGCAACAAUGCUUUCUAUUAU-CA-CCCAGUCCAGCAAUUCUGCUGUCUCAUAGGGCCGGACCACCACUUUCCAUCAUCCA .........((((((((....)))))........-..-....((((((((....))))((((....)))).)))).)))............... ( -17.10) >DroYak_CAF1 2262 93 + 1 AUCAAUUAAGGUAAGCAACAAUGCUUUCUAUUGUACC-CCCAGUCCAGCAAUUCUGCUGUCUCAUAGGGUCGGACCACCACUUUCCAUCAUCCA .........((((((((....)))))....(((.(((-(......(((((....))))).......)))))))))).................. ( -17.62) >consensus AUCAAUUAAGGUAAGCAACAAUGCUUUCUAUUGUCCC_CCCAGUCCAGCGAUUCUGCUGUCUCAUAGGGUCGGACCGCCACUUUCCAUCAUCCA .........(((((((......))))......((((..(((((..(((((....))))).))....)))..)))).)))............... (-16.02 = -16.14 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006