Locus 3931

Sequence ID 3R_DroMel_CAF1
Location 10,667,819 – 10,667,939
Length 120
Max. P 0.971051
window6296

overview

Window 6

Location 10,667,819 – 10,667,939
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -29.51
Consensus MFE -22.66
Energy contribution -23.98
Covariance contribution 1.32
Combinations/Pair 1.06
Mean z-score -2.68
Structure conservation index 0.77
SVM decision value 1.67
SVM RNA-class probability 0.971051
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10667819 120 + 27905053
AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGAAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU
..(((((.(((((((((((.......(((((((((.....))).((.......)).........))))))....(((((....)))))..)))))))))))....)).)))......... ( -27.50)
>DroSec_CAF1 9421 120 + 1
AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCUUACAAGGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU
..(((((.(((((((((((....((((((((((((.....))).(((.....))).........))))))))).(((((....)))))..)))))))))))....)).)))......... ( -34.30)
>DroSim_CAF1 9552 120 + 1
AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGGAGUAACAAGAUUUAACAAU
..(((((.(((((((((((....((((((((((((.....))).((.......)).........))))))))).(((((....)))))..)))))))))))....)).)))......... ( -31.90)
>DroEre_CAF1 6355 115 + 1
AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCCUAACAU-----UACAAAGCAUUCAACAAUUUAUGGAUCGGAGGAUUGCCUUCUUCUGGUUUACGAAGUUAAAAGAUUUGACAAU
........((.((((((((((..(((((((((..........-----.................))))))))).(((((....))))))))))))))).)).(((((.....)))))... ( -27.03)
>DroYak_CAF1 997 120 + 1
AUUCUGUGUCUUGAACCAGAAACACCCAUAGAAGCAUAACGCCAGCAUACAAAGCACAGAACAAUUUAUGGAUCCGAGGAUUGCCUUCUCCUGGUUUAAGUAGUUAAAAGAUUUGACAAU
.........((((((((((......(((((((.((.....))..((.......)).........)))))))....(((((.....)))))))))))))))..(((((.....)))))... ( -26.80)
>consensus
AUUCUGUGUCUUGAACCAGAAACAUCCAUAGAAGCAUAACGUUAGCAUACAAAGCACACAACAAUUUAUGGAUCGGAGGAUUGCCUUCUCCUGGUUUAAGAAGUAACAAGAUUUAACAAU
..(((...(((((((((((....(((((((((.((.....))..((.......)).........))))))))).(((((....)))))..))))))))))).......)))......... (-22.66 = -23.98 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006