Locus 3930

Sequence ID 3R_DroMel_CAF1
Location 10,667,695 – 10,667,786
Length 91
Max. P 0.530569
window6295

overview

Window 5

Location 10,667,695 – 10,667,786
Length 91
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.49
Mean single sequence MFE -32.32
Consensus MFE -25.24
Energy contribution -25.48
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value -0.01
SVM RNA-class probability 0.530569
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10667695 91 - 27905053
CCUUUUUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGACUGCGGCGGUGGCCAGAAACCAGACUGGGGC----GCAAAA
...((((((((((.(((((((((.......)))............((((.....))))))))).).)).....((.....)))).----)))))) ( -28.50)
>DroSec_CAF1 9298 90 - 1
CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGGGCGGGCUGGCUGCGGCGGUGGCCAGGAACCAGAAUGGGGC----GCAAAA
....-..((((.(((((((((((.......))).(((....)))))))))))(((..(....)..))).............))))----...... ( -33.40)
>DroSim_CAF1 9429 90 - 1
CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGCGGUGGCCAGAAACCAGAAUGGGGC----GCAAAA
....-..((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............))))----...... ( -29.70)
>DroEre_CAF1 6228 94 - 1
CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGACUGUGGUGGUGGCCAAAAACCAGAGUGGGGCAAAGGCAAAA
.(((-((((((.(((((((((......((.....))......)).))))))).(((.((((..(.....)..)))).))).)))))))))..... ( -34.70)
>DroYak_CAF1 870 94 - 1
CCUU-UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGUGGUGGCCAAAACCCAGAGUGGGGCAAAGGCAAAA
.(((-((((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............)))))))))..... ( -35.30)
>consensus
CCUU_UUGCCCGGGCCUGCCAACAAAUUGAGUUACAUAAUUAUGCGCGGGCUGGCUGCGGCGGUGGCCAGAAACCAGAAUGGGGC____GCAAAA
.......((((.(((((((((......((.....))......)).)))))))(((..(....)..))).............)))).......... (-25.24 = -25.48 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:40 2006