Locus 3929

Sequence ID 3R_DroMel_CAF1
Location 10,667,413 – 10,667,508
Length 95
Max. P 0.939247
window6294

overview

Window 4

Location 10,667,413 – 10,667,508
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 92.63
Mean single sequence MFE -32.65
Consensus MFE -26.02
Energy contribution -26.46
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -2.08
Structure conservation index 0.80
SVM decision value 1.30
SVM RNA-class probability 0.939247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10667413 95 + 27905053
UUGCUGUUGCCGCUGCUAUUACCCAUACGCACUGUGAUCACCC-GAAAAUACUGAA-GGGGGC--AA-A-CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA
(((((((((((.((((((((...((((.....))))....(((-............-)))...--..-.-.....))))))))))))).))))))...... ( -28.30)
>DroSec_CAF1 9028 96 + 1
UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCGCCC-GAAAAUACUGAA-GGGGGC--AA-AGCUGAAAGUGGCAGGGCGACCGGUAAUUGGAA
(((((((((((.((((((((...((((.....))))...((((-............-..))))--..-.......))))))))))))).))))))...... ( -33.44)
>DroSim_CAF1 9144 98 + 1
UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCACCCCAAAAAUACUGAA-GGGGGC--AAAAGCUGAAAGUGGCAGGGCGACCGGUAAUUGGAA
(((((((((((.((((((((...((((.....)))).(((((((............-))))((--....))))).))))))))))))).))))))...... ( -34.30)
>DroEre_CAF1 5945 95 + 1
UUGCUGUUGCCACUGCCAUUACCCAUACGCAGUGUUAUCACCA-GAAAAUACUGAA-GGGGGC--AA-A-CUGAAAGCGACAGGGCGACCGGUAAUUGGAA
(((((((((((.(((.(....(((.....(((((((.((....-)).)))))))..-.)))((--..-.-......))).)))))))).))))))...... ( -30.30)
>DroYak_CAF1 584 98 + 1
UUGCUGUUGCCACUGCCAUUACCCAUACGCAGUGUGAUCACCA-GAAAAUACUGAGAGGGGGCGAAA-A-CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA
(((((((((((.((((((((.(((.....((((((..((....-))..))))))....))).((...-.-.))..))))))))))))).))))))...... ( -36.90)
>consensus
UUGCUGUUGCCGCUGCCAUUACCCAUACGCACUGUGAUCACCC_GAAAAUACUGAA_GGGGGC__AA_A_CUGAAAGUGGCAGGGCGACCGGUAAUUGGAA
(((((((((((.((((((((.(((.....((.(((..((.....))..))).))...)))((........))...))))))))))))).))))))...... (-26.02 = -26.46 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:39 2006