Locus 3928

Sequence ID 3R_DroMel_CAF1
Location 10,667,208 – 10,667,316
Length 108
Max. P 0.989614
window6293

overview

Window 3

Location 10,667,208 – 10,667,316
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 96.85
Mean single sequence MFE -28.09
Consensus MFE -25.00
Energy contribution -25.16
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.89
SVM decision value 2.17
SVM RNA-class probability 0.989614
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10667208 108 + 27905053
CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA
....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34)
>DroSec_CAF1 8823 108 + 1
CGUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA
....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34)
>DroSim_CAF1 8939 108 + 1
CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA
....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.34)
>DroEre_CAF1 5740 108 + 1
CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAGCCCCGUACAACAAAGAAAGCGACCAAUUUGGCAAAAGCCACAAGGAAACAAAA
.....((...(((((((..((.(((.(((((((.((((......)))).....))))..(.....)...)))))).))...)))))))....))....(....).... ( -26.90)
>DroYak_CAF1 373 108 + 1
CAUUCGGAAAUGCCAAAAUGUGGCCGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGAGCAAUUUGGCAAAAGCCACAAGGAAACAAAA
....((((...((((.....))))..))))(((((.(((((..............)))))(....)........)))))....((((....))))...(....).... ( -28.54)
>consensus
CAUUCGGAAAUGCCAAAAUGUGGCUGUUCGGCUCGAUGGAGCGACAUCAACAUAACUCCGGGCAACAAAGAAAGCGGGCAAUUUGGCAAAAGCCACAAGGAAACAAAA
.....((...(((((((.(((.(((.(((.((((....))))..................(....)...)))))).).)).)))))))....))....(....).... (-25.00 = -25.16 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:38 2006