| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,666,608 – 10,666,718 |
| Length | 110 |
| Max. P | 0.792342 |
| Location | 10,666,608 – 10,666,718 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 96.85 |
| Mean single sequence MFE | -38.60 |
| Consensus MFE | -34.94 |
| Energy contribution | -35.50 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10666608 110 - 27905053 UGGGUCAGGUUGGCUGUCUGUUGGCCAAAACUGUUGCCCGAUUGAAAAUUGGCCUCAACAGGUGCA--GCUCAGCGCUCAAUUAUGGUUGACAGGGGCCAGAUAAUUUAGUG (((((....((((((.(((((..((((...((((((.(((((.....)))))...))))))((((.--.....)))).......))))..)))))))))))...)))))... ( -38.50) >DroSec_CAF1 8227 110 - 1 UGGGUCAGGUUGGCUGUCUGUUGGCCAAAACUGUUGCCCGAUUGAAAAUUGGCCUCAACAGGUGCA--GCUCAGCGCUCAAUUAUGGUUGACAGGGGCCAGAUAAUUUACUG ..(((.((.((((((.(((((..((((...((((((.(((((.....)))))...))))))((((.--.....)))).......))))..)))))))))))....)).))). ( -39.10) >DroSim_CAF1 8340 110 - 1 UGGGUCAGGUUGGCUGUCUGUUGGCCAAAACUGUUGCCCGAUUGAAAAUUGGCCUCAACAGGUGCA--GCUCAGCGCUCAAUUAUGGUUGACAGGGGCCAGAUAAUUUACUG ..(((.((.((((((.(((((..((((...((((((.(((((.....)))))...))))))((((.--.....)))).......))))..)))))))))))....)).))). ( -39.10) >DroEre_CAF1 5137 112 - 1 UGGGUCAGGUUAGCUGCCUGUUGGCCAAAACUGCUGCCAGAUUGAAAAUUGGCCUCAACAGGUGCAGAGCUCAGCGCUCAAUUAUGGUUGACAGGGGCCAGAUAAUUUACUG ..((((..((((((((((((((((((((..(((....)))..(....)))))))..)))))))...((((.....))))......)))))))...))))............. ( -37.70) >consensus UGGGUCAGGUUGGCUGUCUGUUGGCCAAAACUGUUGCCCGAUUGAAAAUUGGCCUCAACAGGUGCA__GCUCAGCGCUCAAUUAUGGUUGACAGGGGCCAGAUAAUUUACUG .........((((((.(((((..((((...((((((.(((((.....)))))...))))))((((........)))).......))))..)))))))))))........... (-34.94 = -35.50 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:37 2006