| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,666,192 – 10,666,309 |
| Length | 117 |
| Max. P | 0.744282 |
| Location | 10,666,192 – 10,666,309 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.88 |
| Mean single sequence MFE | -27.96 |
| Consensus MFE | -21.19 |
| Energy contribution | -22.61 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10666192 117 + 27905053 UUAUGUCUCUACAUUGGCC---GGCUAUAAAAUUUAUGACAACCAACUUAAUUCAAUUUCAGCCAUGUGUCAAUCAACGGCUGCAUUUAAGUGGAAAGUUAUGUGCAGCCAAUCGAAGUC ....(((........))).---((((..........(((((.....((.((......)).)).....)))))......((((((((.(((.(....).))).))))))))......)))) ( -25.80) >DroSec_CAF1 7799 117 + 1 UUAUGUCUCUACAUUGGCC---GGCUAUAAAAUUUAUGACAACCAACAUAAUUCAAUUUCAGCCAUGUGUCAAUCAACGGCUGCAUUUAAGUGGAAAGUUAUGUGCAGCCAAUCGAAGUC ............(((((((---((((.......(((((........))))).........))))..).))))))....((((((((.(((.(....).))).)))))))).......... ( -27.69) >DroSim_CAF1 7912 117 + 1 UUAUGUCUCUACAUUGACC---GGCUAUAAAAUUUAAGACAACCAACUUAAUUCGAUUUCAGCCAUGUGUCAAUCAACGGCUGCAUUUAAGUGGAAAGUUAUGUGCAGCCAAUCCAAGUC ............(((((((---((((.......(((((........))))).........))))..).))))))....((((((((.(((.(....).))).)))))))).......... ( -28.09) >DroEre_CAF1 4701 117 + 1 UUAUGUCUCUACAUUGGCU---GGCUGUAAAAUUUAUGACAACCAACUUAAUUCAAUUUCAGCCAUGUGUCAAUCAACGGCUGCAUUUAAGUGGAAAGUUAUGUGCAGCCAAUCGAAGUC ..........((.(((..(---(((((((.....((((((..(((.(((((........(((((...((.....))..)))))...))))))))...))))))))))))))..))).)). ( -31.10) >DroWil_CAF1 13467 119 + 1 UUAUGUCGCCAAUUUGGUCUUUGGCUAUAAAAUUUAUGACAAA-AACUUAAUUCAAUUUUAGCCAUGUGUCAAUCAACAGCUGCAUUUAAGUGGAAAAUUAUGUGCAGCCGGUAGAAGUA ...(((((((((........))))).(((.....)))))))..-...........(((((.(((.(((........)))(((((((.(((.(....).))).))))))).))).))))). ( -27.10) >consensus UUAUGUCUCUACAUUGGCC___GGCUAUAAAAUUUAUGACAACCAACUUAAUUCAAUUUCAGCCAUGUGUCAAUCAACGGCUGCAUUUAAGUGGAAAGUUAUGUGCAGCCAAUCGAAGUC ............((((((....((((...(((((....................))))).))))....))))))....((((((((.(((.(....).))).)))))))).......... (-21.19 = -22.61 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:36 2006