Locus 3923

Sequence ID 3R_DroMel_CAF1
Location 10,663,690 – 10,663,810
Length 120
Max. P 0.665594
window6283

overview

Window 3

Location 10,663,690 – 10,663,810
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -32.60
Consensus MFE -26.08
Energy contribution -26.89
Covariance contribution 0.81
Combinations/Pair 1.11
Mean z-score -1.65
Structure conservation index 0.80
SVM decision value 0.28
SVM RNA-class probability 0.665594
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10663690 120 + 27905053
AUCUAUGGAGAUUAAAUGUGUAUGGAUGGGUGUGCCUAUCGGUGUUAUUUUCUCCAGCAACACCGCACACAGUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG
......(((.((...(((((((((((((((....))))))((((((............))))))(((((((((......)).)))))))...........)))))))))...)).))).. ( -36.40)
>DroSec_CAF1 5338 120 + 1
AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGGUGUUAUUCUCUCCAGCAACACCGCAAACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG
......(((..(((.(..((((((.((((((((......(((((((............)))))))...))))))))....))))))..).))).......(((((.....)))))))).. ( -32.40)
>DroSim_CAF1 5391 120 + 1
AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGAAGUUAUUCUCUCCAGCAACACCGCACACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG
.....((((((.............((((((....))))))(((....)))))))))((......))((((((..(.....)..))))))...........(((((.....)))))..... ( -30.70)
>DroEre_CAF1 1827 110 + 1
AUAUAUGGAGAUUAAAUGUAUGU----GAGUGUGUCUAUCGGUGUUAUUCUCUCCAGCAACGCCGCACACACU------GCAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG
......(((..(((.(..(((((----((((((((....(((((((............))))))).)))))))------.))))))..).))).......(((((.....)))))))).. ( -30.90)
>consensus
AUCUAUGGAGAUUAAAUGUAUAUGGAUGGGUGUGCCUAUCGGUGUUAUUCUCUCCAGCAACACCGCACACACUCGUACAACAUGUGUGUAUAAAAAAUGCCAUGCAUGUCGCAUGUCCUG
.....((((((...((((.((((.((((((....)))))).)))))))).))))))(((.....(((((((...........)))))))........)))(((((.....)))))..... (-26.08 = -26.89 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:28 2006