| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,660,657 – 10,660,756 |
| Length | 99 |
| Max. P | 0.812751 |
| Location | 10,660,657 – 10,660,756 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 98.00 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -26.70 |
| Energy contribution | -26.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10660657 99 - 27905053 CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAAC-AAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCUUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....)))))))...-.....(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.90) >DroSec_CAF1 2307 99 - 1 CACGUUUGUGCGUUUGAAGCUGUUU-UUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..((((((.-....)))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.40) >DroSim_CAF1 2342 100 - 1 CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....))))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... ( -26.90) >consensus CACGUUUGUGCGUUUGAAGCUGUUUUUUGGGGCGGCAACCAAAAAGUCAACUGGCAAAGGGGAUAAUUUACAAGCAUCACAAACUGCAUAAGUGCAAAAC ...(((((((.(((((..(((((((....))))))).........(((..((.....))..)))......)))))..)))))))((((....)))).... (-26.70 = -26.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:20 2006