Locus 3917

Sequence ID 3R_DroMel_CAF1
Location 10,660,519 – 10,660,619
Length 100
Max. P 0.968096
window6274

overview

Window 4

Location 10,660,519 – 10,660,619
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -27.93
Consensus MFE -26.70
Energy contribution -27.37
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.96
SVM decision value 1.62
SVM RNA-class probability 0.968096
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10660519 100 + 27905053
UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGUCAGAGGGCUAAAACGCGGUAACCGGUAACUGUCCUCAUCACGCAAACGGCCAA
(((((...(((.(((...((..((((((....))))))..)).......((((((....((.(((...)))))....)))))).))).)))...))))). ( -27.70)
>DroSec_CAF1 2169 100 + 1
UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGGCUAAAACACGGUAACCGGUAAGUGUCCUCAUCACGCAACCGGCCAA
(((((...(((.(((...(((((((((((......))))...)))))))((((((....((.(((...)))))....)))))).))).)))...))))). ( -29.70)
>DroSim_CAF1 2204 100 + 1
UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGUCUAAAACACGGUAACCGGUAACUGUCCUCAUCACGCAACCGGCCAA
(((((...(((.(((...(((((((((((......))))...)))))))((((.(....((.(((...)))))....).)))).))).)))...))))). ( -26.40)
>consensus
UGGCUAAGUGCUUGAAAAUGUUAUUAGUUUUAAUUAAUUUUAAAUGGCAGAGGGCUAAAACACGGUAACCGGUAACUGUCCUCAUCACGCAACCGGCCAA
(((((...(((.(((...(((((((((((......))))...)))))))((((((....((.(((...)))))....)))))).))).)))...))))). (-26.70 = -27.37 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:19 2006