| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,660,145 – 10,660,255 |
| Length | 110 |
| Max. P | 0.975070 |
| Location | 10,660,145 – 10,660,255 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 97.56 |
| Mean single sequence MFE | -40.63 |
| Consensus MFE | -40.37 |
| Energy contribution | -40.37 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.975070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10660145 110 + 27905053 UGUCGGGGCGUCUGGAGUGGACUGCUGGAUACUGGAUGCUGGCUACUGGUUCUUGAAUUUCGGAUGCAGGGGCAAGAGCAAGGACAAUGGCCAGUAGCUAAGGCAAUGAU ((((..((((((..(((....)).)..)))......(((((((((...(((((((....((...(((....))).)).)))))))..))))))))))))..))))..... ( -39.50) >DroSec_CAF1 1801 107 + 1 UGUCGGGGCGUCUGGAGUGGACUGCUGGAUACUGGAUGCUGGCUACUGGUUCUUGGAUUUCGGAUGCAGGGGCA-GAGCAAGGACAAUGGCCAGUAGCUAAGGCAAUG-- ((((..(((((((..((((..(....)..)))))))))))((((((((((..(((..((((...(((....)))-..).)))..)))..))))))))))..))))...-- ( -41.60) >DroSim_CAF1 1833 108 + 1 UGUCGGGGCGUCUGGAGUGGACUGCUGGAUACUGGAUGCUGGCUACUGGUUCUUGGAUUUCGGAUGCAGGGGCAAGAGCAAGGACAAUGGCCAGUAGCUAAGGCAAUG-- ((((..(((((((..((((..(....)..)))))))))))((((((((((..(((..((((...(((....)))...).)))..)))..))))))))))..))))...-- ( -40.80) >consensus UGUCGGGGCGUCUGGAGUGGACUGCUGGAUACUGGAUGCUGGCUACUGGUUCUUGGAUUUCGGAUGCAGGGGCAAGAGCAAGGACAAUGGCCAGUAGCUAAGGCAAUG__ ((((..(((((((..((((..(....)..)))))))))))((((((((((..(((..((((...(((....)))...).)))..)))..))))))))))..))))..... (-40.37 = -40.37 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:18 2006