Locus 3912

Sequence ID 3R_DroMel_CAF1
Location 10,657,017 – 10,657,119
Length 102
Max. P 0.542820
window6263

overview

Window 3

Location 10,657,017 – 10,657,119
Length 102
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 88.48
Mean single sequence MFE -16.20
Consensus MFE -12.74
Energy contribution -12.43
Covariance contribution -0.31
Combinations/Pair 1.21
Mean z-score -1.42
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.542820
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10657017 102 - 27905053
CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGACUAAUCAUAUUAAUUAAUU-UACAAA-UGCAUUGCGCACGUGAAAAUGUUGCC-UAACCAAUCA
.........((((((((((((..(((......(((....)))...)))..))))))..((-(((...-(((.....))).)))))..)))))).-.......... ( -16.00)
>DroSec_CAF1 6066 102 - 1
CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGGCUAAUCAUAUUAAUUAAUU-UACAAA-UGCAUUGCGCACGUGAAAAUGUUGCC-UAACCAAUCA
.........((((((.........(((.....)))((((((((((((((..(((.....)-))...)-)).)))).)).)))))...)))))).-.......... ( -16.20)
>DroEre_CAF1 5858 104 - 1
CACCCUGCUGCAACAAAUUUAAUUGACUUAUUGUCUCAUGGCUAAUCAUAUCAAUUAAUUUUAUAAA-AACAACGCGCAUGUGAAACUGUUGCCUUAAACAAUCA
.........((((((...((((((((..(((((((....))).))).)..)))))))).........-.....(((....)))....))))))............ ( -15.00)
>DroYak_CAF1 6111 105 - 1
CAUCCUGCUGCAACAUAUUUAAUUGGCUCAUUGUCUCAUGGCUAGUCAUAUCAAUUAAUUUUAUAAAAAACAUCGCGCACGUGAAAAUGUUGCCUUAACCAAUCC
.........(((((((.....((((((.(((......)))))))))..........................((((....))))..)))))))............ ( -17.60)
>consensus
CAUCCUGCUGCAACAAAUUAAAUUGACCUAUUGUCUCAUGGCUAAUCAUAUCAAUUAAUU_UACAAA_AACAUCGCGCACGUGAAAAUGUUGCC_UAACCAAUCA
.........((((((...((((((((...((((((....))).)))....))))))))..............((((....))))...))))))............ (-12.74 = -12.43 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:09 2006