Locus 391

Sequence ID 3R_DroMel_CAF1
Location 1,465,586 – 1,465,699
Length 113
Max. P 0.591408
window646

overview

Window 6

Location 1,465,586 – 1,465,699
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.41
Mean single sequence MFE -27.37
Consensus MFE -21.78
Energy contribution -22.54
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.12
SVM RNA-class probability 0.591408
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1465586 113 - 27905053
CUGCACUUUCCUACGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG-------
..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44)
>DroSec_CAF1 38132 113 - 1
CUGCACUUUCCUGCGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG-------
..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44)
>DroSim_CAF1 36409 113 - 1
CUGCACUUUCCUGCGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG-------
..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......((((((..(((((..............)).)))..))))))------- ( -27.44)
>DroEre_CAF1 39871 119 - 1
CUGCACCUUCCUAUGAAGGUGCAAGCUUCAACGCACGAAACUCAAAAGUUCGUUAAUUCGCUUAGUACACAGCGCAUUUGCAAUGAUUUUUUAAAUAUACAUAUGUGAAUGUGAGUUCU-
.(((((((((....))))))))).((......))(((((.((....))))))).((((((((........)))(((((..(((((..............))).))..))))))))))..- ( -30.14)
>DroYak_CAF1 38269 117 - 1
CUGCACUUUCCUAUAAAGGUGUAAGCUUCAACGCGCGAAACUCAAAAGUUCGUUGAUUCGUUUAGUACACAGCGCAUUUGAAAUAAUUUU---AACAUGCAUAUGUGAGUUUGAGUUCUU
.((((((((......))))))))(((((.(((..(((((..((((.......)))))))))......((((..(((((((((.....)))---)).))))...)))).))).)))))... ( -24.40)
>consensus
CUGCACUUUCCUACGAAGGUGCCAGCUGCAACGCACGAAACUCAAAUGUUCGUUAAUUCGUUUAGUACACAACGCAUUUGCAAUGGUUUUUUAAAUAUACAUUUGUGAAUGUG_______
..((((((((....))))))))..((((.((((.(((((.(......)))))).....))))))))......(((((((((((((..............))).))))))))))....... (-21.78 = -22.54 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:06 2006