| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,653,617 – 10,653,708 |
| Length | 91 |
| Max. P | 0.866640 |
| Location | 10,653,617 – 10,653,708 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 76.48 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -11.38 |
| Energy contribution | -12.68 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10653617 91 + 27905053 AC-----------ACCAUGACUUUAAGCCAAGGUGUGAGCCAACGGAAGAGUUAAAGCCAGCACAGACUGCCUUGGGUUCGCACAAACAGACAGAAAUGUAU ..-----------...................(((((((((..(....).....(((.(((......))).))).)))))))))......(((....))).. ( -22.40) >DroSec_CAF1 2620 90 + 1 AC-----------ACCAUGGCUUUAAGCCAAGGUGUGAGCCAACGGAAGAGUUA-AGCCAGCACAGACUGCCUUGGGUUCGCACAAACAUACAGAAAUGUAU ((-----------(((.((((.....)))).)))))(((((..(....)...((-((.(((......))).)))))))))........(((((....))))) ( -30.60) >DroSim_CAF1 2596 91 + 1 AC-----------ACCAUGGCUUUAAGCCAAGGUGUGAGCCAACGGAAGAGUUAAAGCCAGCACAGACUGCCUUGGGUUCGCACAAACAGACAGAAAUGUAU ((-----------(((.((((.....)))).)))))(((((..(....).....(((.(((......))).))).)))))..........(((....))).. ( -28.00) >DroEre_CAF1 2642 91 + 1 AC-----------ACCAUGGGUUUAAGCCAAGGUGUGAGCCAUCGGAAGAGUUAAAGCCAGCAUACACUGGCUUGGGUUUGCACAAACAGACAGAAAUGUAU ..-----------......(((....)))...(((..((((.((....))....(((((((......))))))).))))..)))......(((....))).. ( -31.00) >DroYak_CAF1 2655 91 + 1 AC-----------ACCGGCGGUUUAAGCCAAGGUGUGAGCCAUCGGAAGAGUUAAAGCCAGCUUACACUGCCUUGGGUUUGCACAAACAGACAGAUGUGUAU ((-----------((.((((((.(((((...(((...(((..((....)))))...))).))))).))))))....(((((......)))))....)))).. ( -30.10) >DroPer_CAF1 2502 88 + 1 AGCGAAGCGAAGCUCC--GGAGGCAACACAAGGUGUGA-----UGGAAGGGUGAUGCCAAACGCACACUGGCUUGGGCCUCCAGAAAA-------AGUGCGU ......(((....((.--((((((....(((((((((.-----((....((.....))...)))))))...)))).)))))).))...-------..))).. ( -28.90) >consensus AC___________ACCAUGGCUUUAAGCCAAGGUGUGAGCCAACGGAAGAGUUAAAGCCAGCACACACUGCCUUGGGUUCGCACAAACAGACAGAAAUGUAU ................................(((((((((..(....).....(((.(((......))).))).))))))))).................. (-11.38 = -12.68 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:02 2006