| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,649,583 – 10,649,682 |
| Length | 99 |
| Max. P | 0.551670 |
| Location | 10,649,583 – 10,649,682 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -32.68 |
| Consensus MFE | -23.47 |
| Energy contribution | -24.55 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10649583 99 - 27905053 CGAACAGGAGCUGCAGAAUGCAGUGGAGGCCGCGGCGGUUGUCUUCAAGAAGGUCGUGCUGCAGCGUCGC------AAGGAGAA---------GGAGAAGGC---CGCCGA---AGAAGG ......((.(((((.....))))).....)).(((((((..(((((...........((....)).((..------..))....---------)))))..))---))))).---...... ( -34.50) >DroVir_CAF1 23178 105 - 1 GGAGCAGGAGCUGCAGAAUGCAGUGGAGGCAGCUGCCGUUGUCUUCAAGAAGGUCGUGCUGCAACGACGC------AAGGAGAAGGCAA---AGGAGAAGGC---CGCCGA---GGAGGG .........(((((.....)))))((.(((..((.((.((((((((.....((((((......))))).)------.....))))))))---.))))...))---).))..---...... ( -36.00) >DroPse_CAF1 23764 105 - 1 CGAACAGGAGCUGCAGAAUGCAGUGGAGGCCGCGGCAGUUGUCUUCAAGAAAGUGGUCCUGCAGCGCCGCCAGGAAAAGGAGAA---------GGAGAAGGC---CGCCGA---GGAAGG .........(((((.....))))).....((.((((.((..(((((..........((((((......).))))).........---------)))))..))---.)))).---)).... ( -31.81) >DroGri_CAF1 25858 108 - 1 GGAGCAGGAGCUGCAGAAUGCAGUGGAGGCAGCGGCCGUUGUCUUCAAGAAGGUCGUCCUGCAGCGGCGC------AAGGAGAAGGAGAACAAGGAGAAGGC---CGCCGA---GGAAGG ...(((((((((((.....)))))(((((((((....)))))))))..........))))))..((((..------........(.....)..((......)---))))).---...... ( -37.70) >DroWil_CAF1 48559 102 - 1 CGAACAAGAGCUACAGAAUGCAGUGGAAGCUGCCGCUGUGGUCUUCAAAAAGGUCGUGAUGCAGCGUCGC------AAGGAAAA---------GGAGAAGGC---UGCCGAGGAAGAAGG .........(((((((...(((((....)))))..)))))))((((.........((((((...))))))------........---------((((....)---).))......)))). ( -27.10) >DroAna_CAF1 22157 102 - 1 GGAGCAGGAGCUGCAGAAUGCAGUGGAAGCCGCAGCCGUGGUCUUCAAGAAGGUGGUCCUGCAGCGUCGC------AAAGAAAA---------GGAAAAGGAAAAGGCCGA---GGAAGG ((.(((((((((((.....))))).((((((((....)))).))))..........)))))).((...))------........---------..............))..---...... ( -29.00) >consensus CGAACAGGAGCUGCAGAAUGCAGUGGAGGCCGCGGCCGUUGUCUUCAAGAAGGUCGUCCUGCAGCGUCGC______AAGGAGAA_________GGAGAAGGC___CGCCGA___GGAAGG .........(((((((...((..((((((((((....)))))))))).....))....)))))))..................................(((....)))........... (-23.47 = -24.55 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:00 2006