| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,617,449 – 10,617,563 |
| Length | 114 |
| Max. P | 0.614017 |
| Location | 10,617,449 – 10,617,563 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.26 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10617449 114 - 27905053 ACA--AACAAUCAAUUGAUAAAUUCUUCGCUU-UCGUUAGUGAAGCAAA---CAUUCUUAAACAAAAUAGGAAAUACUCCUAUUGGCAACACAGUCAUUGUUAAAUUAUCUAAUUCUUGU ...--.((((..(((((((((...(((((((.-.....)))))))....---........((((((((((((.....)))))))(((......))).)))))...))))).)))).)))) ( -22.70) >DroSec_CAF1 65258 114 - 1 ACC--AAAAAUCAAUUGAUAAAUUAUUUGCUU-UCGUUAAUAAAGCAAA---CAUUCGUAAACAAAAUAGGAAAUAGUCCUAUUGGCAACACAAUCAUUCUUAAAUUAUCUAUUUCUUGU ...--...........(((((.((((((((((-(.......))))))))---.....((......(((((((.....)))))))(....))).........))).))))).......... ( -16.10) >DroSim_CAF1 67028 117 - 1 ACG--AAAAAUCAAUUGAUAAAUUAUUUGCUU-UCGUUAAUAAAGCAAACAACAUUCGUAAACAAAAUAGGAAACAGUCCUAUUGGCAACACAAUCAUUGUUUAAUUAUCUAUUUCUUGU (((--(.((((.....(((((....(((((((-(.......)))))))).........((((((((((((((.....)))))))(....).......))))))).))))).)))).)))) ( -21.00) >DroEre_CAF1 75972 110 - 1 ACAAAAAAAAACAAUUGUUAACUUAUUUGCUU-UCGUUAGUAGAGCAGA---CAUUCUUAAAUAACAUAGGAAAUAGUCCUAUGGGAAAAACAAUCAUUGUUGAAUUAUAUAUU------ .........((((((((((......(((((((-((....).))))))))---.............(((((((.....))))))).....))))...))))))............------ ( -20.30) >DroYak_CAF1 77677 117 - 1 ACUAAAAAAAUCAAUUGUUAACUUAUUUGCUACACGUAAGUGGAGCAGA---UAUUCUUAAAUAACAUAGGAAAUAGUCCUAUUGGAAACACAAUCAUUGCUGAAUUAUCUAUUUCUUGU .................((((..((((((((.(((....))).))))))---))...)))).....((((((((((((((....))).......(((....))).....))))))))))) ( -26.40) >consensus ACA__AAAAAUCAAUUGAUAAAUUAUUUGCUU_UCGUUAGUAAAGCAAA___CAUUCUUAAACAAAAUAGGAAAUAGUCCUAUUGGCAACACAAUCAUUGUUAAAUUAUCUAUUUCUUGU .............((((........(((((((..........)))))))................(((((((.....))))))).......))))......................... (-10.42 = -10.26 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:51 2006