Locus 39

Sequence ID 3R_DroMel_CAF1
Location 296,971 – 297,070
Length 99
Max. P 0.977428
window63

overview

Window 3

Location 296,971 – 297,070
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 97.58
Mean single sequence MFE -30.72
Consensus MFE -28.96
Energy contribution -28.72
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.94
SVM decision value 1.79
SVM RNA-class probability 0.977428
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 296971 99 + 27905053
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGACAGCCGUCAACAUCGAAACCUCAACC
......(((((((....)))...(((((.....)))))..))))((((((......))))))...((((((....)))))).................. ( -33.00)
>DroSec_CAF1 32338 99 + 1
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGUGGCGACAACCGUCAACAUCGAAACCUCAACC
......(((((((....)))...(((((.....)))))..))))((((((......))))))..(((((..(((....)))..)))))........... ( -30.40)
>DroSim_CAF1 34043 99 + 1
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGUGGCGACAACCGUCAACAUCGAAACCUCAACC
......(((((((....)))...(((((.....)))))..))))((((((......))))))..(((((..(((....)))..)))))........... ( -30.40)
>DroEre_CAF1 34739 99 + 1
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGAAAACCGUCAACAUCAAAACUUCAACC
......((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....)))).................. ( -29.80)
>DroYak_CAF1 36533 99 + 1
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGAAAACCGUCAACAUCGAAACCUCAACC
....((((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....))))......)).......... ( -30.00)
>consensus
CACCUCGCACGCUUUUAAGCCAACUGACGACUGGUCGGAUGUGCGUCUGAACCUUAUCAGGCAGCGGCGGCGACAACCGUCAACAUCGAAACCUCAACC
......((.((((.....((((.(((((.....))))).)).))((((((......))))))))))))((((.....)))).................. (-28.96 = -28.72 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:03 2006