| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,616,707 – 10,616,802 |
| Length | 95 |
| Max. P | 0.662488 |
| Location | 10,616,707 – 10,616,802 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.64 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -21.45 |
| Energy contribution | -22.37 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10616707 95 + 27905053 UCCACCUCCAUUGCCGCUCAGCUGAGCUCGACUCUGCGCAAAGAUCUCCAGCUGAGUGGAA--ACGGGACCGGAGCUCCCUAUAAUCAGCACCACCU-------- ......(((....(((((((((((((.((.............)).)).)))))))))))..--...)))..((.(((..........))).))....-------- ( -30.02) >DroVir_CAF1 77955 86 + 1 UCCAGCUCCAUUGCGGCACAGUUGAGCACAACGCUGCGCAAGGAUCUGCAGUUGAAUGCCACAACGGGGC-----CAUCCUAUCAGCGACG-------------- ....(((((.(((.((((..((((....))))((((((........))))))....)))).))).)))))-----................-------------- ( -26.70) >DroSec_CAF1 64530 95 + 1 UCCACCUCCAUUGCCGCUCAGCUCAGCUCGACGCUGCGCAAAGAUCUCCAGCUGAGUGGAA--ACGGGACCGUAGCUCCCUAUAAUCAGCACCAUCU-------- .............((((((((((((((.....)))).............))))))))))..--..((((.......)))).................-------- ( -25.21) >DroSim_CAF1 66289 95 + 1 UCCACCUCCAUUGCCGCUCAGCUGAGCUCGACGCUGCGCAAAGAUCUCCAGCUGAGUGGAA--ACGGGACCGGAGCUCCCUAUAAUCACCACCACCU-------- (((...(((....(((((((((((((.((...((...))...)).)).)))))))))))..--...)))..))).......................-------- ( -30.30) >DroEre_CAF1 75239 103 + 1 UCCGCCUCCAUUACCGCUCAGCUGAGCUCGACGCUGCGCAAAGAUCUCCAGCUGAGUGGAA--ACGGGACCGGAGCUCCCUAUCAUCAGCACCACCAGAACCACC ((((..(((.((.(((((((((((((.((...((...))...)).)).))))))))))).)--).)))..))))(((..........)))............... ( -33.50) >DroYak_CAF1 76922 95 + 1 UCCGCCUCCAUUACCGCUCAGCUGAGCUCGACGCUGCGCAAAGAUCUCCAGCUGAGUGGAA--ACGGGACCGGAGCUCCCUAUCAUCAGCACCAGCA-------- ((((..(((.((.(((((((((((((.((...((...))...)).)).))))))))))).)--).)))..))))..............((....)).-------- ( -33.70) >consensus UCCACCUCCAUUGCCGCUCAGCUGAGCUCGACGCUGCGCAAAGAUCUCCAGCUGAGUGGAA__ACGGGACCGGAGCUCCCUAUAAUCAGCACCACCU________ .............(((((((((((((.((...((...))...)).)).)))))))))))......((((.......))))......................... (-21.45 = -22.37 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006