Locus 3898

Sequence ID 3R_DroMel_CAF1
Location 10,614,550 – 10,614,667
Length 117
Max. P 0.735413
window6243

overview

Window 3

Location 10,614,550 – 10,614,667
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.88
Mean single sequence MFE -40.65
Consensus MFE -33.44
Energy contribution -32.97
Covariance contribution -0.47
Combinations/Pair 1.19
Mean z-score -2.17
Structure conservation index 0.82
SVM decision value 0.44
SVM RNA-class probability 0.735413
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10614550 117 + 27905053
AACUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGAAGCGUUGUGCAAGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGCCACAGUGCCUC---C
..(((((...))(((........)))...))).((((.((((.((((((....))))))......(((((.........)))))....))))))))..(((((((....)).))))---) ( -41.40)
>DroPse_CAF1 95413 117 + 1
AAUUCGCAUAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUGCAGGACUCCGGCUUCUCAACGGAGACCAGUUCUUCCAAGGAGGGACACAGCGCCUC---C
..(((((.....(((........))).....)))))............((..(((((((...((.(((((.........))))).)).(((((((....))))))))))))))..)---) ( -40.80)
>DroGri_CAF1 97783 120 + 1
AAUUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUCCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGUCACAGUGCCUCCUCC
.....((.(...(((........)))...).))((((.((((.((((((....))))))...((.(((((.........))))).)).)))))))).((((((.........)))))).. ( -41.90)
>DroWil_CAF1 68235 117 + 1
AACUCGCACAGCGGCAAAAAAGAGCCAAAGAGCGGAGAGAAUAAUAAUGGCAGUGUUGUCCAGGACUCUGGCUUCUCAACGGAGACCAGUUCUUCCAAGGAUGGACACAGUGCCUC---C
..(((((.(...(((........)))...).)).)))...........((((.(((.((((((((..((((((((.....)))).)))).)))((....)))))))))).))))..---. ( -37.40)
>DroAna_CAF1 59387 117 + 1
AACUCGCACAGCGGCAAAAAAGAGCCAAAGAGCGGAGAGAACAACAACGGGAGCGUUGUCCAAGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGCCACAGUGCCUC---C
..(((((...))(((........)))...))).((((.((((.((((((....))))))......(((((.........)))))....))))))))..(((((((....)).))))---) ( -40.80)
>DroPer_CAF1 82952 117 + 1
AAUUCGCAUAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGUGUUGUGCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGACACAGCGCCUC---C
..(((((.....(((........))).....)))))(((.((((((.(....)))))))((.((.(((((.........))))).)).(((((((....)))))))...))..)))---. ( -41.60)
>consensus
AACUCGCACAGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGCAGCGUUGUCCAGGACUCCGGCUUCUCAACGGAGACCAGUUCCUCCAAGGAGGGACACAGUGCCUC___C
.....((((((((((........)))......(((((......((((((....))))))......))))))))((((....))))...(.(((((....))))).)...))))....... (-33.44 = -32.97 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006