| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,614,125 – 10,614,215 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 10,614,125 – 10,614,215 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -25.32 |
| Energy contribution | -25.23 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10614125 90 + 27905053 CCA---------------------------CCAC---AUACACAGCGAGCAAACCAAGUCGCUGCAGGAGCUGCAGCACGAGGUUGGCGCUCUGCUGGAGUUCCGGGACCUGGUCAUAGA (((---------------------------((..---..((.((((((((.((((..((.(((((((...)))))))))..))))...)))).))))..))....))...)))....... ( -33.70) >DroVir_CAF1 75242 99 + 1 UCA------------------UCCGCAUCAUCCC---AUACACAGCGAACAGACCAAGUCGCUGCAGGAGCUGCAGCAUGAGGUGGGCGCUCUGUUGGAAUUCCGAGAUCUGGUCAUCGA ...------------------.(((.(((.....---...((.((((..(..(((..((.(((((((...)))))))))..))))..)))).))((((....))))))).)))....... ( -29.20) >DroGri_CAF1 97346 99 + 1 UCA------------------UCCACAUCAUCCC---AUACACAGCGAACAGACCAAGUCGCUGCAGGAGCUGCAGCAUGAGGUUGGCGCUCUGUUGGAAUUCCGAGAUCUGGUCAUCGA ...------------------.(((.(((.....---...((.((((....((((..((.(((((((...)))))))))..))))..)))).))((((....))))))).)))....... ( -31.10) >DroWil_CAF1 67796 114 + 1 UCACAUGGCUAACACUAACCAUUCAC---AUCAC---AUACACAGCGAACAGACCAAAUCGCUGCAGGAGCUACAGCAUGAGGUUGGUGCCCUGCUGGAGUUCCGGGAUCUGGUCAUUGA (((.(((((((.......((......---.....---.....((((((..........))))))..((((((.(((((.(.(((....))))))))).))))))))....)))))))))) ( -35.70) >DroMoj_CAF1 67011 99 + 1 UCA------------------UCCGCAUCAUCCC---AUACACAGCGAGCAGACCAAGUCGCUGCAGGAGCUGCAGCACGAGGUGGGCGCUCUGUUGGAGUUCAGAGAUCUGGUCAUUGA (((------------------.(((.(((.((..---..((.((((((((...(((..(((((((((...)))))))..))..)))..)))).))))..))...))))).)))....))) ( -31.50) >DroAna_CAF1 58950 93 + 1 CCA---------------------------UCACAAUAUCCACAGCGAGCAGACCAAGUCGCUGCAGGAGCUGCAGCACGAGGUCGGUGCCCUGCUGGAGUUCCGGGAUCUGGUCAUCGA ...---------------------------...............(((...(((((..((.(....((((((.(((((.(.(((....))))))))).))))))).))..))))).))). ( -33.70) >consensus UCA__________________UCC_C___AUCAC___AUACACAGCGAACAGACCAAGUCGCUGCAGGAGCUGCAGCACGAGGUUGGCGCUCUGCUGGAGUUCCGAGAUCUGGUCAUCGA .............................................(((...(((((.(((.(....((((((.(((((.(.(((....))))))))).))))))).))).))))).))). (-25.32 = -25.23 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:48 2006